PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.9G167000.1.p
Common NameSETIT_039499mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family B3
Protein Properties Length: 543aa    MW: 61027.6 Da    PI: 8.9349
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.9G167000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.68.1e-1736121798
                         .-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                  B3   7 psdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                         +  +++++ +++p++f++++ gk   s t++le+ +g  ++v++  + + +++vl+ GW+ Fv+a++++e+D+++F+ +++s f  +v ++
  Seita.9G167000.1.p  36 RMTANTKHSMTIPNRFLKHFAGK--LSGTIKLESANGSLYDVEV--TERYRKMVLRHGWEAFVDAHHIEENDSLLFRNIENSVF--KVLIL 120
                         556678889********888877..677****************..9999999************************8888888..77776 PP

                         - CS
                  B3  98 r 98 
                         +
  Seita.9G167000.1.p 121 D 121
                         5 PP
2B337.63.9e-122663461899
                         --HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                  B3  18 lpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                         + k++a +h   ++++  +tl    ++++W  k+  rk ++ y+l++ W +Fv++n+++e+D+++F  ++  +f+++v ++r+
  Seita.9G167000.1.p 266 ITKEYAFAHF--PHGNANVTLHRpGKSKKWHPKFYTRKDRSVYMLRGQWLDFVRDNHVQERDICLFLPTNGGRFTFTVYLLRA 346
                         5566665663..345567999995566*******54666666*************************8877999999999886 PP
3B339.51e-124715392999
                         -..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS
                  B3  29 kkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 
                         + ++++  ++ +  g+ W++k+ +++ +++ +l++G  +Fv+ ngL++gD+++F+l+++ ++ +++v+++++
  Seita.9G167000.1.p 471 P-AKGQ-TMVLHCLGKIWKIKMVFQRVRRW-FLSGGRPKFVRGNGLRAGDICLFELKKNqKKLTMKVHIISR 539
                         3.3443.44566689*******99999877.5899**********************999********9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.6E-2027125IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.82E-2127125IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.78830123IPR003340B3 DNA binding domain
CDDcd100174.39E-1832121No hitNo description
SMARTSM010191.1E-932123IPR003340B3 DNA binding domain
PfamPF023627.0E-1537120IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.1E-15240343IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.63E-17242345IPR015300DNA-binding pseudobarrel domain
CDDcd100173.46E-13248345No hitNo description
PROSITE profilePS5086310.08249347IPR003340B3 DNA binding domain
SMARTSM010190.0044252347IPR003340B3 DNA binding domain
PfamPF023621.7E-10266346IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.1E-15439539IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.84E-14439538IPR015300DNA-binding pseudobarrel domain
CDDcd100171.43E-12443538No hitNo description
SMARTSM010192.9E-4445540IPR003340B3 DNA binding domain
PfamPF023628.5E-11464539IPR003340B3 DNA binding domain
PROSITE profilePS5086310.052483540IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 543 aa     Download sequence    Send to blast
MGRNDGSRMK KPCDCCQRYL DHLDEKNQTM SCFLMRMTAN TKHSMTIPNR FLKHFAGKLS  60
GTIKLESANG SLYDVEVTER YRKMVLRHGW EAFVDAHHIE ENDSLLFRNI ENSVFKVLIL  120
DSDGCEKMFC CSGIKTTPNV GKISVDSVDI SSSSQYDTTE SSGSERAARC VKGSSNRHGK  180
TSKMAVTSSS SGGSGDDIPS ENESFESDDL QTPPGADYVI SCRSHLSEEQ KERVIALIQE  240
IQPEITVYIA VMQKCHVHPP NPFVAITKEY AFAHFPHGNA NVTLHRPGKS KKWHPKFYTR  300
KDRSVYMLRG QWLDFVRDNH VQERDICLFL PTNGGRFTFT VYLLRATATH SGRRGAGFQR  360
VGPCLAGPSA NMASEIHKEE PTDGEHVSLE SDMHEISHES LESGEDSGGP SQPPYILPGK  420
SRLSKSQKKI VEERVRDIQC EVPIYVAIMT KSSLAYMQEF GSRYAAAVHL PAKGQTMVLH  480
CLGKIWKIKM VFQRVRRWFL SGGRPKFVRG NGLRAGDICL FELKKNQKKL TMKVHIISRE  540
QL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.9G167000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025792770.10.0B3 domain-containing protein Os03g0619600-like isoform X1
RefseqXP_025792772.10.0B3 domain-containing protein Os03g0619600-like isoform X1
RefseqXP_025792773.10.0B3 domain-containing protein Os03g0619600-like isoform X1
RefseqXP_025792774.10.0B3 domain-containing protein Os03g0619600-like isoform X1
RefseqXP_025792775.10.0B3 domain-containing protein Os03g0619600-like isoform X1
SwissprotQ6AV211e-180Y3982_ORYSJ; B3 domain-containing protein Os03g0619800
TrEMBLA0A368SHL40.0A0A368SHL4_SETIT; Uncharacterized protein
STRINGSi039499m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58531172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.13e-12B3 family protein