PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Seita.9G169600.1.p

Common Name

SETIT_039061mg

Organism

Setaria italica

Taxonomic ID

4555

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

NAC

Protein Properties

Length: 212aa MW: 21927.8 Da PI: 9.5613

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Seita.9G169600.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	27.5	9.1e-09	9	144	8	125
NAM 8 hPtdeelvveyLkkkvegkk...leleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 hP+d++l+ + L++ + + + + +i+ +d+y+v P++L + + ++ wyf ++++ +++ + a +g W ++ ++ Seita.9G169600.1.p 9 HPNDHDLIAFVLRPMAVAGHhhgFVGGGIIHLADVYSVAPERLAEryapAPGTGGGIWYFLCPARCRHR--AAAAGALGQGCWASSSETGG 97 8**********99666662333333479999******85344333335568999999877654..45666889*9999888 PP NAM 92 vlsk.....kgelvglkktLvfy........kgrapkgektdWvmhe 125 v ++ +g+ vg + L + a ++ W+m e Seita.9G169600.1.p 98 VAARpvrgpDGRRVGQSRALSYSsygartaaAPWAAAVTRHGWCMVE 144 8888787779999******98444332211122333466677766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	18.642	2	169	IPR003441	NAC domain
SuperFamily	SSF101941	8.5E-17	8	169	IPR003441	NAC domain
Pfam	PF02365	1.1E-7	9	145	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 212 aa Download sequence Send to blast
MAAAAAADHP NDHDLIAFVL RPMAVAGHHH GFVGGGIIHL ADVYSVAPER LAERYAPAPG 60 TGGGIWYFLC PARCRHRAAA AGALGQGCWA SSSETGGVAA RPVRGPDGRR VGQSRALSYS 120 SYGARTAAAP WAAAVTRHGW CMVELALDKQ GGGGGRAGGD FVLCKLFRSP RNEAPTTAAP 180 GLVSGCKRKA AVDDHPDTPP GVRQHLMQRS Y*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Seita.9G169600.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004986380.1	1e-150	uncharacterized protein LOC101758118
TrEMBL	A0A368SHH0	1e-149	A0A368SHH0_SETIT; Uncharacterized protein
STRING	Si039061m	1e-144	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4363	21	58

Link Out ? help Back to Top
Phytozome	Seita.9G169600.1.p