PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.9G169700.1.p
Common NameLOC101758906, SETIT_037343mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family C2H2
Protein Properties Length: 231aa    MW: 24470.8 Da    PI: 8.9877
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.9G169700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2187.9e-0684106123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ++C+ CgksF+++  L  H+++H
  Seita.9G169700.1.p  84 HRCSVCGKSFPSHQALGGHMSSH 106
                         79*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.26E-1084106No hitNo description
PROSITE profilePS5015711.48984111IPR007087Zinc finger, C2H2
PfamPF139122.6E-1184107IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.2E-484107IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003559.8E-484106IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028086106IPR007087Zinc finger, C2H2
SuperFamilySSF576672.26E-10141168No hitNo description
PfamPF139124.6E-12145170IPR007087Zinc finger, C2H2
PROSITE profilePS501579.452146173IPR007087Zinc finger, C2H2
SMARTSM003550.29146168IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280148168IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MAATVEAAVL EAAAVPWPPR HQEGDDEEER AVVYAQERCA KGKRSRRRHL RRAPTEEEHL  60
ALCLLMLARG QRDARAPRVP AQEHRCSVCG KSFPSHQALG GHMSSHRTRP PAAAPPTPAA  120
EKPAPAASPA ASSSTSGAGS SGSRVHECSM CRKTFPTGQA LGGHKRCHYD GTAAGASTTS  180
TTGFSRGFDL NIPALPELIL GDRCMPAAAE EEKEVLSPLA FKKPRLMILA *
Functional Description ? help Back to Top
Source Description
UniProtPotential transcription factor which binds the nonamer motif 5'-CATCCAACG-3'. Possibly involved in regulating transcription of the histone H3 and H4 genes. {ECO:0000269|PubMed:8223628}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.9G169700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004982438.11e-165zinc finger protein 1
SwissprotQ424305e-46ZFP1_WHEAT; Zinc finger protein 1
TrEMBLK4AEN61e-164K4AEN6_SETIT; Uncharacterized protein
STRINGSi037343m1e-164(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP102236113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27730.19e-28salt tolerance zinc finger