PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.9G204400.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family MYB
Protein Properties Length: 250aa    MW: 27575.5 Da    PI: 8.5635
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.9G204400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.11.3e-15351148
                        TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                        +g+W++eEd l+++ v+++G g +W + ++t+g++R++ +c+srw++yl
  Seita.9G204400.1.p  3 KGKWSKEEDNLIKNHVEKYGIGrSWQALSNTLGLKRCGRSCRSRWLNYL 51
                        79******************999************************97 PP
2Myb_DNA-binding31.34.8e-1058101247
                         SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         g++T  E+ ++ +   + G+  W+ Ia+ ++ gRt+  +k++w++ 
  Seita.9G204400.1.p  58 GNFTLAEERIICEMYSKRGSC-WSVIAAQLP-GRTDLAIKNYWNST 101
                         89*******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129421.995155IPR017930Myb domain
SuperFamilySSF466891.02E-25298IPR009057Homeodomain-like
SMARTSM007173.0E-11253IPR001005SANT/Myb domain
PfamPF002493.5E-13351IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.6E-20458IPR009057Homeodomain-like
CDDcd001674.69E-10551No hitNo description
PROSITE profilePS5129414.46356106IPR017930Myb domain
SMARTSM007172.0E-956104IPR001005SANT/Myb domain
PfamPF002499.4E-958101IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.6E-2059105IPR009057Homeodomain-like
CDDcd001674.42E-759102No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MKKGKWSKEE DNLIKNHVEK YGIGRSWQAL SNTLGLKRCG RSCRSRWLNY LRPGLKHGNF  60
TLAEERIICE MYSKRGSCWS VIAAQLPGRT DLAIKNYWNS TLKKKNPAAR TPPACSTSSD  120
AGTPARDLQL VAYSSEESST AGSSPANAKP VLADPPPVPV VTDGQGPIAA VPVSRPVRIE  180
QKQAMVSRSR LEKQQQPPPP ACDQTGERIM DIVCAPMSPV PLSFIEPEEL ACIYEFDDID  240
SFLPWFDHH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-24110525127MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.9G204400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0798888e-37AC079888.10 Oryza sativa chromosome 10 BAC OSJNBa0078O01 genomic sequence, complete sequence.
GenBankAP0149668e-37AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence.
GenBankCP0126188e-37CP012618.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 10 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014661280.10.0transcription factor RAX2
TrEMBLA0A368SIM70.0A0A368SIM7_SETIT; Uncharacterized protein
STRINGSi037244m1e-171(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP122282638
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37780.18e-44myb domain protein 87