PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.9G232400.1.p
Common NameSETIT_039011mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family GATA
Protein Properties Length: 181aa    MW: 19414.8 Da    PI: 8.3484
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.9G232400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA62.16.6e-20100134135
                GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                         C++Cgt +Tp+WR+gp+g  tLCnaCGl+yr+ +l
  Seita.9G232400.1.p 100 CRHCGTEETPQWREGPEGAATLCNACGLRYRSGRL 134
                         *******************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004013.0E-1994144IPR000679Zinc finger, GATA-type
PROSITE profilePS5011413.34994130IPR000679Zinc finger, GATA-type
SuperFamilySSF577167.6E-1696155No hitNo description
Gene3DG3DSA:3.30.50.107.0E-1697131IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.35E-1999155No hitNo description
PfamPF003205.0E-18100134IPR000679Zinc finger, GATA-type
PROSITE patternPS003440100125IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MVVENAPHGD SVAAVADELF FSAGAGVDLE TFFDHAALEV AAAGSSGAKG EEEELEWLSN  60
KDAFPAVETM LPAAAPRPPT KGARRRRRVV AKKAMAGRRC RHCGTEETPQ WREGPEGAAT  120
LCNACGLRYR SGRLVPEYRP ASSPTFSPEM HSNRHNRVVE MRRQRQVAAV ASPGAAFGEK  180
*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00377DAPTransfer from AT3G24050Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.9G232400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022685360.11e-129GATA transcription factor 5-like
TrEMBLA0A368SJS61e-127A0A368SJS6_SETIT; Uncharacterized protein
STRINGSi039011m1e-111(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141733108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G45170.11e-34GATA transcription factor 14