PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.9G268200.1.p
Common NameLOC101765666, SETIT_034046mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family CAMTA
Protein Properties Length: 1031aa    MW: 114762 Da    PI: 5.8717
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.9G268200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1171.51.2e-53211382118
                CG-1   2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseen 91 
                         lke ++rwl++ ei++iL+n+++++++ e+++rp+sgsl+L++rk++ryfrkDG++w+kk d ktv+E+he+LK g+++vl+cyYah+e+n
  Seita.9G268200.1.p  21 LKEaQHRWLRPAEICEILKNYRNFRIAPEPPNRPPSGSLFLFDRKVLRYFRKDGHNWRKKNDQKTVKEAHERLKSGSIDVLHCYYAHGEDN 111
                         45559************************************************************************************** PP

                CG-1  92 ptfqrrcywlLeeelekivlvhylevk 118
                          +fqrr+yw+Lee++ +ivlvhyle+k
  Seita.9G268200.1.p 112 INFQRRTYWMLEEDFMHIVLVHYLETK 138
                         ************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143780.64917143IPR005559CG-1 DNA-binding domain
SMARTSM010761.8E-7220138IPR005559CG-1 DNA-binding domain
PfamPF038595.3E-4823136IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.103.1E-6450537IPR013783Immunoglobulin-like fold
PfamPF018333.9E-7451529IPR002909IPT domain
SuperFamilySSF812965.0E-16451537IPR014756Immunoglobulin E-set
SuperFamilySSF484034.66E-16645746IPR020683Ankyrin repeat-containing domain
CDDcd002043.64E-12647744No hitNo description
Gene3DG3DSA:1.25.40.207.4E-17647748IPR020683Ankyrin repeat-containing domain
PROSITE profilePS500888.683653685IPR002110Ankyrin repeat
PROSITE profilePS5029716.175653746IPR020683Ankyrin repeat-containing domain
PROSITE profilePS500888.736686718IPR002110Ankyrin repeat
SuperFamilySSF525402.07E-8846898IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000150.086847869IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.407848877IPR000048IQ motif, EF-hand binding site
PfamPF006120.0032849868IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0022870892IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.56871895IPR000048IQ motif, EF-hand binding site
PfamPF006122.0E-4873892IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1031 aa     Download sequence    Send to blast
MASVEARRLA VVPQLDIEQI LKEAQHRWLR PAEICEILKN YRNFRIAPEP PNRPPSGSLF  60
LFDRKVLRYF RKDGHNWRKK NDQKTVKEAH ERLKSGSIDV LHCYYAHGED NINFQRRTYW  120
MLEEDFMHIV LVHYLETKGG KSSRTRVNNN MIQEAAVDSP SSQLPSQTIE GESSFSGQAS  180
EYEDAESADI YSGGAGYHSF TRMQQHENGT GPVIDSSVFN SYTPTSSIGN YQGLHAMTQN  240
TSFYPGNQHN SPLVLNGSST MVAANGRANQ TDVPSWNPVI ELDNGPVQMP PLQFSVPPDQ  300
GTSTEGLGID YLTFDEVYSD GLSLKDIGAA GADGESFWQF PSATGDLSTA ENSFPQQNDG  360
SLEAAIGGYP FLKTQSSNLS DILKDSFKKT DSFTRWMSKE LPEVEDSQIQ SSSGVYWSTE  420
EADNIIEASS REPLDQFTVS PMLSQDQLFS IVEFAPSWTY VGSKTKILVT GNILNNSQVT  480
ERCKWSCMFG EVEVPAKILA DGTLICYSPQ HKPGRVPFYI TCSNRLACSE VREFEFRPTV  540
TQYMDAPSPH GATNKVYFQI RLDKLLSLGP DEYQATVSNP SLEMIELSKK IGSLMMSNDE  600
WSNLLKLAVD NNEHSTDDQQ DQFAENLIKD KLHVWLLNKV GVGGKGPSVL DDEGQGVLHL  660
AAALGYDWAI RPTLAAGVNI NFRDVHGWTA LHWAAFCGRE RTVVALIALG AAPGALTDPS  720
PDFPERTPAD LASANGQKGI SGFLAESSLT SHLQALNLKE ANMAEISGLP GIGDVNERNS  780
LQPPSGDSLG PVRNAAQAAA RIYQVFRVQS FQRKQAAQYE DDKGGMSDER ALSLLSVKPS  840
KPGQLDPLHS AATRIQNKFR GWKGRKEFLL IRQRIVKIQA HVRGHQVRKH YRKIVWSVGI  900
VEKIILRWRR RGAGLRGFRS TEGSTEGSSG GTSSSLIQDK PSRDDYDFLQ EGRKQTEERL  960
QKALARVKSM AQYPEARDQY HRIYTVVSKM QESQAMQEKM VEESAEMDDG YLMNELQELL  1020
NDDTSIHGYF *
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.9G268200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004983217.10.0calmodulin-binding transcription activator 3 isoform X1
TrEMBLK4A5920.0K4A592_SETIT; Uncharacterized protein
STRINGSi034046m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60838140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64220.20.0Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains