PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.9G268900.1.p
Common NameSETIT_039382mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family FAR1
Protein Properties Length: 577aa    MW: 66510.3 Da    PI: 8.5105
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.9G268900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1293.5e-0942854991
                FAR1 49 ekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91
                        e++ +++++ r++Cka +k+k ++ ++ w  ++++leHnH+l p
  Seita.9G268900.1.p 42 EERVHEKMSMRCECKAFVKIKWNQkKDYWFFERIRLEHNHPLHP 85
                        56778999*************999899**************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.7E-64385IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 577 aa     Download sequence    Send to blast
MEQRTADSAI TGTGGKWTPL QHVSPGTMAM PGPERTYLHP GEERVHEKMS MRCECKAFVK  60
IKWNQKKDYW FFERIRLEHN HPLHPSLTIT QFLRIQKDKD PIVMGIVDQM HRCDASHNTT  120
VNVLAELYGG RQNFTFTEMD LRNRKATTTR EERENDIPKL LEFFREMKAQ NEYFYYELQD  180
EQANTFEWLF GAFKNCMSGS RDPRCILIVI CNLKYLIKLH TIINHPLTPT EFEPAWNKLV  240
DEYGIWEDDT IQGLWERRKL WVAAYLKPLM TSTQRSESVN KMIKGSSFTG HMTCMSKFAR  300
RMLDFIQHTN HIAGGETHWS QSVHTSLITK YRETYIYSTA FHIDPHPNEV DVYLVTHTNQ  360
SWQYAWFQHS FRVEADVRSD YIIKRYTRGA RTMVTWDRHD IVTSIPGYES DQYKTKKLVE  420
ITMAAVRACR KTSLGFKKGC EYWFKKGCLH WLSGVNTGAS HVGDHTEEQS DVIPHIIGEP  480
AASWAEQDAA VESAVQISEC APREARTKGR KRGRKQVVNE HASSNKAQGQ QTCGYCGSLG  540
HYSTGCDLNP DNINKKRGAS GSLRGKMGWK EGENTH*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1508515GRKRGRKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.9G268900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004955119.10.0protein FAR1-RELATED SEQUENCE 5
TrEMBLK4AKF90.0K4AKF9_SETIT; Uncharacterized protein
STRINGSi039382m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1643736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-09FAR1-related sequence 5