PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.9G289900.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family NAC
Protein Properties Length: 598aa    MW: 65001.7 Da    PI: 4.5834
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.9G289900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM53.11.1e-162014611127
                 NAM  11 deelvveyLkkkvegkklelee.v.ikevdiykvePwdLpk......kvkaeekewyfFskrdkkyatgkrknratk..sgyWkatgkdke 91 
                         d+ l+  +L+ k++g+ l+++  + ++++diy ++P +L +      + k+e  +w+fF+  + k++t++rk+r++   +g+W++    ++
  Seita.9G289900.1.p  20 DDRLL-SFLRLKLAGEALPAAAgAlFHDCDIYAADPATLTAgylpapARKGEGYSWFFFTFVRPKSSTDSRKKRMVGggAGTWHSERAPRA 109
                         55566.89*******99666442359*************8556776544445669*******************87645889********* PP

                 NAM  92 vlskkgelvglkktLvfykg.rapkgektdWvmheyr 127
                         v++ +g+ vg  + + + ++  ++ +e+tdW m e++
  Seita.9G289900.1.p 110 VHDDEGNCVGHTQYFSYKRKtGKSCSERTDWYMVEFT 146
                         ******************663566779********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100520.6059171IPR003441NAC domain
SuperFamilySSF1019411.26E-2120170IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 598 aa     Download sequence    Send to blast
MAPLAADTPQ PDDPAPTSSD DRLLSFLRLK LAGEALPAAA GALFHDCDIY AADPATLTAG  60
YLPAPARKGE GYSWFFFTFV RPKSSTDSRK KRMVGGGAGT WHSERAPRAV HDDEGNCVGH  120
TQYFSYKRKT GKSCSERTDW YMVEFTDGQE GDHDRIHGGE PVLVLCKIYK AHSGSRSSSS  180
SSRSARKRKA TEEHADPSSA PLKAKRRLFS SSAPTQLPAS QEQVSSRVTM VTSRLELQGE  240
AAKVEPEAYH GEIDDHALDD FLQFMKSEFQ TDSTSDYLNF STNPEASQEQ VSSRVTMATS  300
GLELQSEAAK VEPEAYHGET DDDTVDDLLL YWESQCKTNS TSDYQKFSPN PEASASQSKT  360
STTHPSSLMS ETEMSQAKIG DTSDYLRFWP EPEASQGMSN STSDYLKFSP EAEATENMTN  420
TAPPSLVMSE PGMTAQGKIG GTSDNLRLWS DLEAFQGMIN SPSPSLLTSE PWMTLSFGSE  480
PEVSQGMIQS TSEYLNFSPK TEALQKTRTT PRSLLMFEPE VQAPQGESET SALDWGIQMA  540
GVGTTPVLVH CNDNSTAASC SCSLGWFVGA PPKYDMWSTT GFPSSPSMFG APALWSC*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.9G289900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004961530.10.0uncharacterized protein LOC101760926 isoform X2
TrEMBLA0A368SLT30.0A0A368SLT3_SETIT; Uncharacterized protein
STRINGSi038541m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP16781612