PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.9G314000.1.p
Common NameSETIT_036301mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family NAC
Protein Properties Length: 365aa    MW: 41521.6 Da    PI: 11.5652
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.9G314000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM168.42.4e-5261331128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                         lppGfrFhPtd+elv +yLk+kv++ k+el evi+ +d+yk+ePw+Lp k  + +++ ew+fF++rd+ky++g+r+nrat++gyWkatgkd
  Seita.9G314000.1.p   6 LPPGFRFHPTDDELVGYYLKRKVDNLKIEL-EVIPVIDLYKSEPWELPeKsFLPKRDLEWFFFCPRDRKYPNGSRTNRATATGYWKATGKD 95 
                         79****************************.99**************95334445667********************************* PP

                 NAM  90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                         +++ + +g + gl+ktLvfy+grap ge+tdWvmheyrl
  Seita.9G314000.1.p  96 RRIAC-DGGVYGLRKTLVFYRGRAPGGERTDWVMHEYRL 133
                         *****.9999***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.7E-603155IPR003441NAC domain
PROSITE profilePS5100557.016156IPR003441NAC domain
PfamPF023655.6E-297133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008283Biological Processcell proliferation
GO:0071365Biological Processcellular response to auxin stimulus
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MGTMTLPPGF RFHPTDDELV GYYLKRKVDN LKIELEVIPV IDLYKSEPWE LPEKSFLPKR  60
DLEWFFFCPR DRKYPNGSRT NRATATGYWK ATGKDRRIAC DGGVYGLRKT LVFYRGRAPG  120
GERTDWVMHE YRLCQDLAHG ACNFIGAYAL CRVIKRHEAG LLQGEPTAAK AKGASNAAGA  180
ARGQMSKGLQ QLVPLQQRAA QRVHTHQFQP AASYSGHQQH VPEPPRVRRR RDGDGHHRAA  240
VEPAAPAPVR AQQPPVPARR VFHRRRLPRR GRERVAFALH RRRRRHGDGR RGARPEMGQL  300
DNLPKHLLKW CRGVEHGGEP DAVQAGERRR RRRRPGGVLL LGRDQDRVLI SRGPAKRRTW  360
FACS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-51116012169NO APICAL MERISTEM PROTEIN
1ut4_B2e-51116012169NO APICAL MERISTEM PROTEIN
1ut7_A2e-51116012169NO APICAL MERISTEM PROTEIN
1ut7_B2e-51116012169NO APICAL MERISTEM PROTEIN
3swm_A3e-51116015172NAC domain-containing protein 19
3swm_B3e-51116015172NAC domain-containing protein 19
3swm_C3e-51116015172NAC domain-containing protein 19
3swm_D3e-51116015172NAC domain-containing protein 19
3swp_A3e-51116015172NAC domain-containing protein 19
3swp_B3e-51116015172NAC domain-containing protein 19
3swp_C3e-51116015172NAC domain-containing protein 19
3swp_D3e-51116015172NAC domain-containing protein 19
4dul_A2e-51116012169NAC domain-containing protein 19
4dul_B2e-51116012169NAC domain-containing protein 19
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1263284RRRLPRRGRERVAFALHRRRRR
2326334ERRRRRRRP
3327333RRRRRRR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00439DAPTransfer from AT4G17980Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.9G314000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022678549.11e-176LOW QUALITY PROTEIN: NAC domain-containing protein 71-like
TrEMBLK4ABP40.0K4ABP4_SETIT; Uncharacterized protein
STRINGSi036301m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62093854
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17980.13e-82NAC domain containing protein 71