PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.9G330900.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family FAR1
Protein Properties Length: 156aa    MW: 17914.5 Da    PI: 8.955
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.9G330900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR171.51.9e-2241127289
                FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 
                         f+ +Y+ + GF+vrk++++k+ r+g+it+ +fvC +eg+r ++k++ + ++ +raetrt+C+ ++++k+++ +g+ +v++++leHnH+l
  Seita.9G330900.1.p  41 FWLSYSGQKGFEVRKRYTNKR-RDGKITSCRFVCVNEGHRLPDKRD-HLTKCPRAETRTDCQVHMNLKLDReKGNLKVSEVVLEHNHAL 127
                         99**************99887.8999*****************999.999*******************999***************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031019.5E-1841127IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 156 aa     Download sequence    Send to blast
MDANQGKSNT PVMGEHREGL IPGLVPYLGM EFKNSDEAWA FWLSYSGQKG FEVRKRYTNK  60
RRDGKITSCR FVCVNEGHRL PDKRDHLTKC PRAETRTDCQ VHMNLKLDRE KGNLKVSEVV  120
LEHNHALHLP ATLHLMAPQR KISDLQAFEI EQQMM*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.9G330900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024314647.12e-73protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A368SNG51e-114A0A368SNG5_SETIT; Uncharacterized protein
STRINGOS10T0571900-004e-68(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59470.21e-16FAR1 family protein