PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.9G350800.1.p
Common NameSETIT_039493mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family ERF
Protein Properties Length: 158aa    MW: 17407.8 Da    PI: 9.4276
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.9G350800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP237.46.3e-123179155
                 AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                        s+ykGV   + +grW A+I++      r +r +lg+f  + +Aa+a++ a+++++g
  Seita.9G350800.1.p 31 SRYKGVVPQP-NGRWGAQIYE------RhARAWLGTFADEAMAARAYDVAALRFRG 79
                        79****9888.8*********......44**********99*************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.6E-153187IPR016177DNA-binding domain
PfamPF008472.6E-73179IPR001471AP2/ERF domain
CDDcd000187.51E-203186No hitNo description
Gene3DG3DSA:3.30.730.106.8E-183286IPR001471AP2/ERF domain
SMARTSM003804.6E-183293IPR001471AP2/ERF domain
PROSITE profilePS5103219.2823287IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.101.0E-4119157IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 158 aa     Download sequence    Send to blast
MSTSTQEVEQ MDWMDGDGDA VAASPRARTS SRYKGVVPQP NGRWGAQIYE RHARAWLGTF  60
ADEAMAARAY DVAALRFRGR GRAVNFLGSP AGMAKIAFLA VQPKAEMVPR VALFEKALQA  120
EKHFPPLDEA APPVLLVFED VAGGKVWRFW YLYWSSS*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.9G350800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0982985e-37FP098298.1 Phyllostachys edulis cDNA clone: bphyem207d01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004986867.13e-79AP2/ERF and B3 domain-containing protein Os01g0141000
SwissprotQ9LS062e-34RAVL4_ARATH; AP2/ERF and B3 domain-containing transcription factor ARF14
TrEMBLK4AKR81e-110K4AKR8_SETIT; Uncharacterized protein
STRINGSi039493m1e-111(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45638203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G25730.11e-36ethylene response DNA binding factor 3