PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Seita.9G356700.3.p

Organism

Setaria italica

Taxonomic ID

4555

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

Protein Properties

Length: 202aa MW: 22978.3 Da PI: 9.9512

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Seita.9G356700.3.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	54.7	1.8e-17	113	198	2	91
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 +k+ ++++ + l+lp +f++eh +e +k +tl de+ +++v++ ++++y +t W++F+ +++L++gD +vF+l+++++f+ Seita.9G356700.3.p 113 LKTV-SKYYATAFSLSLPPHFCREHL--PEHGKVITLVDEEDDEFDVQYYKGPNDRGYCIT-SWRGFATDHKLDDGDCLVFQLIQQRKFK 198 4444.777788888*********5..346779***********667777779999.9******************9977773 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	9.6E-19	106	200	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	6.08E-20	107	199	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	6.89E-22	110	200	No hit	No description
PROSITE profile	PS50863	10.771	111	201	IPR003340	B3 DNA binding domain
SMART	SM01019	3.4E-11	112	200	IPR003340	B3 DNA binding domain
Pfam	PF02362	2.6E-15	113	198	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 202 aa Download sequence Send to blast
MADAARYEVQ RRRQIEENKR RIEELGLRHL AAAAMPPKAK QLKLKHKARA PGAAAPPRRS 60 GRVANLPDQP DYRENVKKKI VIGPTAAERS YAIAKAKAKE LEGELRADYP TFLKTVSKYY 120 ATAFSLSLPP HFCREHLPEH GKVITLVDEE DDEFDVQYYK GPNDRGYCIT SWRGFATDHK 180 LDDGDCLVFQ LIQQRKFKVR S*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Seita.9G356700.3.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012698151.1	1e-147	B3 domain-containing protein Os06g0194400
Refseq	XP_022679065.1	1e-147	B3 domain-containing protein Os06g0194400
Swissprot	Q69V36	1e-55	Y6944_ORYSJ; B3 domain-containing protein Os06g0194400
TrEMBL	A0A368SP64	1e-147	A0A368SP64_SETIT; Uncharacterized protein
STRING	Si039359m	1e-108	(Setaria italica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G42700.1	9e-24	B3 family protein

Link Out ? help Back to Top
Phytozome	Seita.9G356700.3.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]