PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.9G374600.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family B3
Protein Properties Length: 203aa    MW: 23011.1 Da    PI: 7.0279
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.9G374600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B344.62.6e-1421951898
                        --HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                  B3 18 lpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                        +p  f + ++ +++ +  ++l+ +sg++W  kl     s+++++t GW+eF  +++++ g+f+vF +dg+s f   +kvf+
  Seita.9G374600.1.p 21 IPQAFNKFME-NEPLG-VVSLKGPSGNTWHAKL--ILDSEGFYFTHGWNEFFIDHNINLGEFLVFGYDGHSHF--SIKVFD 95
                        7888874444.55555.8***************..888889***************************99999..888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010194.0E-51297IPR003340B3 DNA binding domain
CDDcd100174.86E-132095No hitNo description
PfamPF023626.7E-122095IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.4E-152099IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.71E-1820102IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.9282197IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MLLDCVCRGR SGEKILWVHR IPQAFNKFME NEPLGVVSLK GPSGNTWHAK LILDSEGFYF  60
THGWNEFFID HNINLGEFLV FGYDGHSHFS IKVFDLTGCE KQSTFLSCPS KDVTKECEKG  120
LMGIDATKTS HCPHEDYKGH NTMGGLQEDV DHTHMMHLIH HFSLSGIEKT RKLDILEEFS  180
GSSQRANDRL FGASFYNRRK GK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.9G374600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A368SPT51e-149A0A368SPT5_SETIT; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44613766
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53310.13e-13B3 family protein