PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Seita.9G412700.1.p

Common Name

LOC101756896, SETIT_036380mg

Organism

Setaria italica

Taxonomic ID

4555

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

bZIP

Protein Properties

Length: 354aa MW: 38129.4 Da PI: 6.5961

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Seita.9G412700.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	30.8	6.3e-10	157	201	5	49
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkel 49 kr++r NR +A rs +RK +i eLe+kv++L++e ++L +l Seita.9G412700.1.p 157 KRAKRILANRQSAARSKERKARYITELERKVQTLQTEATTLSAQL 201 9****************************************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.5E-14	153	217	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.599	155	218	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.3E-8	157	203	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	9.14E-11	157	208	No hit	No description
Gene3D	G3DSA:1.20.5.170	2.9E-10	157	211	No hit	No description
CDD	cd14703	3.32E-22	158	207	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 354 aa Download sequence Send to blast
MQQHPEPADP PGRAFPPPPA PAPAAARGAY HRRARSEVAF RLPDDLGLGG GAGPDGDGFD 60 EIGSEDDLFS TFMDIEKISS SGPSDRDRDR DRAAETSSPP RPKHRHSSSV DGSGLFFSPG 120 VGGGAGKDAA ASLAEVMEAK KAMSPEQLAE LAAIDPKRAK RILANRQSAA RSKERKARYI 180 TELERKVQTL QTEATTLSAQ LTLFQRDTTG LSAENAELKI RLQAMEQQAQ LRDALNDALK 240 QELERLKLAT GETTNTSETY NMRFQHVPYN SSFFLLSQQN TASHPGSAQL APPFHPPHPN 300 VPNHQMLSHP HTLPDIMQQD SLGRLQGLDI GKGPLVVKSE SSSISASESS STF*

Sequence ? help Back to Top

Protein Sequence Length: 354 aa Download sequence Send to blast

MQQHPEPADP PGRAFPPPPA PAPAAARGAY HRRARSEVAF RLPDDLGLGG GAGPDGDGFD  60
EIGSEDDLFS TFMDIEKISS SGPSDRDRDR DRAAETSSPP RPKHRHSSSV DGSGLFFSPG  120
VGGGAGKDAA ASLAEVMEAK KAMSPEQLAE LAAIDPKRAK RILANRQSAA RSKERKARYI  180
TELERKVQTL QTEATTLSAQ LTLFQRDTTG LSAENAELKI RLQAMEQQAQ LRDALNDALK  240
QELERLKLAT GETTNTSETY NMRFQHVPYN SSFFLLSQQN TASHPGSAQL APPFHPPHPN  300
VPNHQMLSHP HTLPDIMQQD SLGRLQGLDI GKGPLVVKSE SSSISASESS STF*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor probably involved in vascular development and shoot tissue organization. Binds to the DNA sequence 5'-CCGAGTGTGCCCCTGG-3' present in the promoter region Box II of the phloem-specific rice tungro bacilliform virus (RTBV) promoter. May regulate tissue-specific expression of the RTBV promoter and virus replication. {ECO:0000269\|PubMed:14704272}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Seita.9G412700.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT033210	0.0	BT033210.1 Zea mays full-length cDNA clone ZM_BFb0176L19 mRNA, complete cds.
GenBank	BT063263	0.0	BT063263.1 Zea mays full-length cDNA clone ZM_BFc0045A20 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004984459.1	0.0	transcription factor RF2b
Swissprot	Q6S4P4	1e-164	RF2B_ORYSJ; Transcription factor RF2b
TrEMBL	K4ABX3	0.0	K4ABX3_SETIT; Uncharacterized protein
STRING	Si036380m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2683	36	83

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40620.1	4e-72	bZIP family protein

Link Out ? help Back to Top
Phytozome	Seita.9G412700.1.p
Entrez Gene	101756896

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Dai S,Zhang Z,Bick J,Beachy RN Essential role of the Box II cis element and cognate host factors in regulating the promoter of Rice tungro bacilliform virus. J. Gen. Virol., 2006. 87(Pt 3): p. 715-22 [PMID:16476995] Liu Y,Dai S,Beachy RN Role of the C-terminal domains of rice (Oryza sativa L.) bZIP proteins RF2a and RF2b in regulating transcription. Biochem. J., 2007. 405(2): p. 243-9 [PMID:17371296] Dai S, et al. Transgenic rice plants that overexpress transcription factors RF2a and RF2b are tolerant to rice tungro virus replication and disease. Proc. Natl. Acad. Sci. U.S.A., 2008. 105(52): p. 21012-6 [PMID:19104064]