PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Seita.9G425500.1.p

Common Name

SETIT_039258mg

Organism

Setaria italica

Taxonomic ID

4555

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

TCP

Protein Properties

Length: 136aa MW: 14226.1 Da PI: 11.859

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Seita.9G425500.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	41	7.1e-13	36	102	38	89
TCP 38 eLGfdkdsktieWLlqqakpaikeltgt................ssssasec..eaesssssasnsssg.k 89 LG+ d++t++WLlqqa+pai + tgt +c ++ ++ as+++ g + Seita.9G425500.1.p 36 DLGHNFDGETVQWLLQQAEPAIVATTGTmpasalasaapshipvA----ASCssSPRLRRWRASAQRCGgS 102 59**************************77776664444322220....2222222222222222222221 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	6.1E-9	36	94	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 136 aa Download sequence Send to blast
MEVGAPARAA EAAGRSSSCR RRGLPDPDAR ALRRADLGHN FDGETVQWLL QQAEPAIVAT 60 TGTMPASALA SAAPSHIPVA ASCSSSPRLR RWRASAQRCG GSTSPSTTRP SSSDGRRKQG 120 FCRSSMFAVL KISLF*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Seita.9G425500.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT039315	7e-36	BT039315.1 Zea mays full-length cDNA clone ZM_BFc0005G03 mRNA, complete cds.
GenBank	BT043344	7e-36	BT043344.1 Zea mays full-length cDNA clone ZM_BFc0166E23 mRNA, complete cds.
GenBank	BT085767	7e-36	BT085767.1 Zea mays full-length cDNA clone ZM_BFc0060L15 mRNA, complete cds.
GenBank	EU962618	7e-36	EU962618.1 Zea mays clone 244263 PAS2 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001142396.1	3e-13	uncharacterized LOC100274570
TrEMBL	K4AK35	4e-90	K4AK35_SETIT; Uncharacterized protein
STRING	Si039258m	7e-91	(Setaria italica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72010.1	4e-10	TCP family protein

Link Out ? help Back to Top
Phytozome	Seita.9G425500.1.p