PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Seita.9G430300.1.p

Common Name

LOC101773120, SETIT_039895mg

Organism

Setaria italica

Taxonomic ID

4555

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

bZIP

Protein Properties

Length: 168aa MW: 18179 Da PI: 10.715

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Seita.9G430300.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	34.9	3.4e-11	21	65	3	47
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkk 47 e +r r+ +NR++Ar+sR ++++ ++ L+ +++ L eN+a++ Seita.9G430300.1.p 21 EERRRNRMTSNRLSARKSRMKRQQHVDDLAAEAERLRRENEAMRA 65 567889************************************995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	7.7E-11	19	83	IPR004827	Basic-leucine zipper domain
Pfam	PF07716	3.1E-5	20	66	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.231	21	84	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	7.7E-10	22	65	No hit	No description
SuperFamily	SSF57959	4.63E-8	23	65	No hit	No description
CDD	cd14702	1.44E-13	24	73	No hit	No description
PROSITE pattern	PS00036	0	27	41	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 168 aa Download sequence Send to blast
MVPAAAPQQG VVRHAAAATE EERRRNRMTS NRLSARKSRM KRQQHVDDLA AEAERLRREN 60 EAMRAGVGGA LRRGRALEQE NRVLAAHARQ LCAALLLANS QLRLLGGVAG VPLDVPGVPD 120 HLVQLYGGTQ QMPVTPLAPT PPPLQLPLEI QMLLQPDVMD AVGVLEF*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Seita.9G430300.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ728266	1e-133	KJ728266.1 Zea mays clone pUT6543 bZIP transcription factor (bZIP24) gene, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022679299.1	1e-114	bZIP transcription factor 53
TrEMBL	K4ALW0	1e-113	K4ALW0_SETIT; Uncharacterized protein
STRING	Si039895m	1e-114	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12504	28	37

Link Out ? help Back to Top
Phytozome	Seita.9G430300.1.p
Entrez Gene	101773120