PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.9G439500.1.p
Common NameLOC105913496, SETIT_037484mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family Trihelix
Protein Properties Length: 213aa    MW: 23453.7 Da    PI: 11.2729
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.9G439500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix26.32e-0817101286
            trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm......rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                         W++ e+ +Li+a    + r   + l  ++W++ ++++      + r f+r+  qC+ + + l+kryk++  ++        s++p+++ql+
  Seita.9G439500.1.p  17 WSDGETSTLIDAWGPAHLRRHPRHLLLNDWRAAASAVnahratAGRRFNRTRLQCQTRVRTLKKRYKEELSRQPP------SRWPHLRQLH 101
                         ***************************************99999999********************98777664......4688888886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.8E-1616101No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MPSCGRKPPP ERASGNWSDG ETSTLIDAWG PAHLRRHPRH LLLNDWRAAA SAVNAHRATA  60
GRRFNRTRLQ CQTRVRTLKK RYKEELSRQP PSRWPHLRQL HPFLASADGP PPGFPAATRA  120
PAPAVKQEVE EEVGGSVGLA ASWTVPRRPR NGAARSSSSG FCPGAVVTKL ADVYERVEMA  180
RIGAGNLKME MEAQRAMLDA VKVEQQWKME NA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.9G439500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012704591.11e-154trihelix transcription factor ASIL1
TrEMBLK4AF271e-153K4AF27_SETIT; Uncharacterized protein
STRINGSi037484m1e-154(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP147531213
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05550.29e-07sequence-specific DNA binding transcription factors