PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.9G449600.1.p
Common NameLOC101772952, SETIT_037660mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family C2H2
Protein Properties Length: 189aa    MW: 19890.4 Da    PI: 7.6184
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.9G449600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.70.00165274123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        ++C+ C++ F++   L  H  +H
  Seita.9G449600.1.p 52 FECKTCNRQFPSFQALGGHRASH 74
                        89**********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.24E-850116No hitNo description
PfamPF139123.2E-135176IPR007087Zinc finger, C2H2
SMARTSM003550.165274IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.185279IPR007087Zinc finger, C2H2
PROSITE patternPS0002805474IPR007087Zinc finger, C2H2
PfamPF139124.7E-993118IPR007087Zinc finger, C2H2
PROSITE profilePS501579.01694121IPR007087Zinc finger, C2H2
SMARTSM003554.894116IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028096116IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MAYGKRSRQQ AEEMVRLPDG ADVASFLLLF SGHHYQHQAS SPDPASAPER VFECKTCNRQ  60
FPSFQALGGH RASHKKPRTA DGGAAAEPPK PKVHGCSICG LEFAIGQALG GHMRRHRAAE  120
ADGGSNNGLG LGLSLGSGLG QKDGGRKVAP AAEVVLDLNA VPEMEEEPDR AKLGLSVEFP  180
VAVVDFLR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.9G449600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ2448793e-76DQ244879.1 Zea mays clone 11295 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004984762.11e-135zinc finger protein ZAT11
TrEMBLK4AFK31e-133K4AFK3_SETIT; Uncharacterized protein
STRINGSi037660m1e-134(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP50137157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28710.11e-28C2H2 family protein