PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Seita.9G449800.1.p

Common Name

SETIT_039675mg

Organism

Setaria italica

Taxonomic ID

4555

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

bHLH

Protein Properties

Length: 219aa MW: 23660.8 Da PI: 8.7371

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Seita.9G449800.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	13.8	0.00011	105	144	11	55
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +R +++ +++ L++l+ + +K + a++L +A +Ik+L+ Seita.9G449800.1.p 105 KRSQKLGDKITALQQLVSPY-----GKTDTASVLHEAATCIKHLH 144 6889999********999.....9***************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	9.953	94	143	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.6E-5	105	151	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	5.89E-9	105	155	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 219 aa Download sequence Send to blast
MWNCSVPHPL LLPYGDDYGI GASPIYSETR PAVSQFSFTQ PTAASPLVKW TAAGETMTGD 60 GSRLRGSKRF KTTTATATET AQGPQHGLRC HAKPTRNRTV KAPCKRSQKL GDKITALQQL 120 VSPYGKTDTA SVLHEAATCI KHLHEQIQIL TVSYPAISSP ASQQDTGEEE GATDLRRRGL 180 CLAPLSPEVV QLAVTVEAAL RHRDTADTED RWRLLGTL*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	62	70	RLRGSKRFK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Seita.9G449800.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025792107.1	1e-116	uncharacterized protein LOC112873346
Swissprot	Q9SFZ3	2e-20	BH110_ARATH; Transcription factor bHLH110
TrEMBL	K4AL95	1e-159	K4AL95_SETIT; Uncharacterized protein
STRING	Si039675m	1e-160	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3758	24	26

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G27660.1	4e-22	bHLH family protein

Link Out ? help Back to Top
Phytozome	Seita.9G449800.1.p

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]