PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.9G476600.1.p
Common NameSETIT_039876mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family MYB
Protein Properties Length: 241aa    MW: 25737.2 Da    PI: 7.552
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.9G476600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.49e-152369148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        + +WT +Ed  l + v+ +G+ +W++I++ ++ gR +k+c++rw ++l
  Seita.9G476600.1.p 23 KSAWTMDEDAALREQVRAHGPQNWAAISAALP-GRNPKSCRLRWCQHL 69
                        579*****************************.***********9986 PP
2Myb_DNA-binding482.8e-1578120347
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         ++++eEde++++ +++++++ W+tIa  ++ gR+++ +k+rw+++
  Seita.9G476600.1.p  78 PFSPEEDEKIAHFHRLYPNK-WATIAGFLP-GRSDNAIKNRWNSV 120
                         79******************.*********.***********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129422.5151873IPR017930Myb domain
SMARTSM007171.6E-132271IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.5E-182271IPR009057Homeodomain-like
SuperFamilySSF466891.43E-2822117IPR009057Homeodomain-like
PfamPF002495.2E-142369IPR001005SANT/Myb domain
CDDcd001678.34E-132569No hitNo description
PROSITE profilePS5129417.95774125IPR017930Myb domain
SMARTSM007173.3E-1275123IPR001005SANT/Myb domain
PfamPF002497.8E-1478121IPR001005SANT/Myb domain
CDDcd001679.02E-1278121No hitNo description
Gene3DG3DSA:1.10.10.601.0E-1878121IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MAVPNEAAVV VGVQPVPAAA TKKSAWTMDE DAALREQVRA HGPQNWAAIS AALPGRNPKS  60
CRLRWCQHLT PGVDPARPFS PEEDEKIAHF HRLYPNKWAT IAGFLPGRSD NAIKNRWNSV  120
LGKQQPQHHQ QQRAAAVPFL GLSDGTLPLF PLTSGDVRAF GRSVPVLRRP PPGDAGVDLS  180
GACLKLFPLA PGDLVGGNDS GEAAEMDVDC SADDQTVTEM TLWPSTMAAF KAMVQAVRAP  240
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3zqc_A4e-27231382127MYB3
3zqc_D4e-27231382127MYB3
3zqc_G4e-27231382127MYB3
3zqc_J4e-27231382127MYB3
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.9G476600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004987088.11e-176transcription factor MYB1
TrEMBLA0A368SVI81e-175A0A368SVI8_SETIT; Uncharacterized protein
STRINGSi039876m1e-171(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP49603465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50060.15e-36myb domain protein 77