PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.9G503700.1.p
Common NameLOC101755544, SETIT_037255mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family HD-ZIP
Protein Properties Length: 240aa    MW: 26406.6 Da    PI: 7.0641
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.9G503700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.54.8e-1858111356
                         --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
            Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                         k++++++eq ++Le  F+k+r++ + ++ +LA++lgL+ +qV vWFqNrRa++k
  Seita.9G503700.1.p  58 KKRRLSDEQARQLEINFRKERKLETPRKVQLAAELGLDAKQVAVWFQNRRARHK 111
                         56689***********************************************99 PP
2HD-ZIP_I/II107.88.2e-3558149293
         HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                         kkrrls+eq+++LE +F++e+kLe+ rKv+la eLgl+++qvavWFqnrRAR+k+k +E+++++L++a+da++ +n++Le+e  +++++l+
  Seita.9G503700.1.p  58 KKRRLSDEQARQLEINFRKERKLETPRKVQLAAELGLDAKQVAVWFQNRRARHKSKLMEEEFSKLRAAHDAVVLQNCHLETELLKMKDRLA 148
                         9*************************************************************************************99987 PP

         HD-ZIP_I/II  93 e 93 
                         e
  Seita.9G503700.1.p 149 E 149
                         5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.7E-1653118IPR009057Homeodomain-like
PROSITE profilePS5007116.71453113IPR001356Homeobox domain
SMARTSM003891.5E-1456117IPR001356Homeobox domain
SuperFamilySSF466898.13E-1657120IPR009057Homeodomain-like
CDDcd000862.10E-1458113No hitNo description
PfamPF000461.6E-1558111IPR001356Homeobox domain
PRINTSPR000315.3E-68493IPR000047Helix-turn-helix motif
PROSITE patternPS00027088111IPR017970Homeobox, conserved site
PRINTSPR000315.3E-693109IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MGCEEDERLL FPSFAFPAES FAEAATPGSG GEQKKARQRR RRKPRPVGEG EGGDEQAKKR  60
RLSDEQARQL EINFRKERKL ETPRKVQLAA ELGLDAKQVA VWFQNRRARH KSKLMEEEFS  120
KLRAAHDAVV LQNCHLETEL LKMKDRLAES EEEKRKLIAA AAAAAAAAAG GAGAGSSSPS  180
SSSFSTVTHH PAALVGQFGV EAEEAADLTY MSEYAYNSYM NMMDLAPNYF GSSVYDQFN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13844RRRRKPR
24060RRKPRPVGEGEGGDEQAKKRR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.9G503700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0431630.0BT043163.2 Zea mays full-length cDNA clone ZM_BFc0114N11 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004985327.11e-175homeobox-leucine zipper protein HOX12
SwissprotQ10QF21e-92HOX12_ORYSJ; Homeobox-leucine zipper protein HOX12
TrEMBLK4AEE81e-174K4AEE8_SETIT; Uncharacterized protein
STRINGSi037255m1e-175(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP200638101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66700.11e-33homeobox 53
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Gao S,Fang J,Xu F,Wang W,Chu C
    Rice HOX12 Regulates Panicle Exsertion by Directly Modulating the Expression of ELONGATED UPPERMOST INTERNODE1.
    Plant Cell, 2016. 28(3): p. 680-95
    [PMID:26977084]