PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.9G523400.1.p
Common NameLOC101764187, SETIT_038282mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bHLH
Protein Properties Length: 86aa    MW: 9619.89 Da    PI: 9.3331
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.9G523400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.41.3e-0811521454
                        HHHHHHHHHHHCTSCCC....TTS-STCHHHHHHHHHHHHHH CS
                 HLH 14 driNsafeeLrellPkas.kapskKlsKaeiLekAveYIksL 54
                        d+iN+ +++L+ llP++s + ++ + s +  L++++ YIksL
  Seita.9G523400.1.p 11 DEINELISKLQALLPESSrRRNASRSSASKLLKETCSYIKSL 52
                        68**************6647777889***************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.75152IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.5E-61152IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-91167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.85E-91171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 86 aa     Download sequence    Send to blast
MSGRRGRISD DEINELISKL QALLPESSRR RNASRSSASK LLKETCSYIK SLHREVDDLS  60
ERLSGLMSTM DNDSPQAEII RSLLR*
Functional Description ? help Back to Top
Source Description
UniProtAtypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. {ECO:0000250}.
UniProtAtypical and probable non DNA-binding bHLH transcription that integrates multiple signaling pathways to regulate cell elongation and plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.9G523400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0639071e-107BT063907.2 Zea mays full-length cDNA clone ZM_BFc0119B05 mRNA, complete cds.
GenBankEU9645851e-107EU964585.1 Zea mays clone 280170 DNA binding protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004985532.16e-53transcription factor ILI3
SwissprotA2XD159e-35ILI3_ORYSI; Transcription factor ILI3
SwissprotQ10R479e-35ILI3_ORYSJ; Transcription factor ILI3
TrEMBLA0A3L6SFA51e-51A0A3L6SFA5_PANMI; Transcription factor ILI3
TrEMBLK4AHC51e-51K4AHC5_SETIT; Uncharacterized protein
STRINGSi038282m2e-52(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92838145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28857.14e-25bHLH family protein