PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.9G553000.4.p
Common NameLOC101780284, SETIT_034133mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family Nin-like
Protein Properties Length: 481aa    MW: 53584.5 Da    PI: 6.0784
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.9G553000.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK90.81.1e-28161211252
              RWP-RK   2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                         ek++sle+l+k+F++++k+AAk+Lgvc+T+LKriCRq+GI+RWP+Rkik++
  Seita.9G553000.4.p 161 EKTVSLEELRKHFAGSLKEAAKNLGVCPTTLKRICRQHGINRWPSRKIKKV 211
                         799**********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151917.006150231IPR003035RWP-RK domain
PfamPF020421.9E-26163211IPR003035RWP-RK domain
Gene3DG3DSA:3.10.20.2402.8E-24379463No hitNo description
SuperFamilySSF542775.15E-22380462No hitNo description
PROSITE profilePS5174522.045382465IPR000270PB1 domain
SMARTSM006665.4E-22382465IPR000270PB1 domain
PfamPF005646.7E-16383463IPR000270PB1 domain
CDDcd064071.13E-41383464No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 481 aa     Download sequence    Send to blast
MLNSLSITIQ QTCYTLRVVS LKELVDEGSF ETSTVTPAEF YEKPIHENLD EVCSNIEVPV  60
RTTSLETSEE VTSWIASLVD AQSKGVKEMD GDLPFGFSKQ EDEGFSVTAG WHTPPVLGPK  120
GTIFSGFKHH EEYEVKEPIC SRHPSPSNLD KTVEKRRTKM EKTVSLEELR KHFAGSLKEA  180
AKNLGVCPTT LKRICRQHGI NRWPSRKIKK VGHSLKKLQM VIDSVHGAEG TVQLSSLYEN  240
FTKTTWLERE LQGDGTYPLS EQKGHLEPSV PDRQCEGRFT SHTSGSNSMS PSCSQSSNSS  300
HGCSSGSKSQ QNGSAPQLAV KQEVFMEENQ SSTLLKAASH AELQMFTEER PVTLPRSESQ  360
MLLSEQKPVE NMSGMQKSKP ESLKIKAMYG EERCIFRLQP SWGFEKLKEE IVKRFSIGQE  420
MYVDLKYLDD ESEWVLLTCD ADLLECIDVY KSSSAQTVRI LVNANVQPVL GPSFGQTGLS  480
*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.9G553000.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012698188.10.0protein NLP1 isoform X1
RefseqXP_012698189.10.0protein NLP1 isoform X1
SwissprotQ10S830.0NLP1_ORYSJ; Protein NLP1
TrEMBLA0A368SWA20.0A0A368SWA2_SETIT; Uncharacterized protein
STRINGSi034133m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35270.13e-77Nin-like family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]