PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.1G003400.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family MIKC_MADS
Protein Properties Length: 475aa    MW: 53182.4 Da    PI: 8.7856
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.1G003400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF88.34e-283786251
                        ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
              SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                        rie+++ rqvtfskRr g+lKKA+ELSvLCdaeva+i+fs++g+ly ++s
  Sevir.1G003400.1.p 37 RIEDTTSRQVTFSKRRSGLLKKAYELSVLCDAEVALIVFSPRGRLYQFAS 86
                        8***********************************************86 PP
2K-box80.93.1e-27106200599
               K-box   5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95 
                         ++++++e   e+++ e++ L ++i+ ++   R+llGe+L+s+s++eLq+Le qLeksl++iR++K++ l++qi el++ke++l++en +Lr
  Sevir.1G003400.1.p 106 TNEKVHEPGVEKWKYEVTTLGQKIDAIEAYRRKLLGESLGSCSIQELQELELQLEKSLSSIRQRKQKKLMDQILELREKEQKLSKENAMLR 196
                         556699999********************************************************************************** PP

               K-box  96 kkle 99 
                          + +
  Sevir.1G003400.1.p 197 DQCK 200
                         9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.5E-362887IPR002100Transcription factor, MADS-box
PROSITE profilePS5006629.9832888IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.09E-2930113IPR002100Transcription factor, MADS-box
PROSITE patternPS0035003084IPR002100Transcription factor, MADS-box
PRINTSPR004043.5E-283050IPR002100Transcription factor, MADS-box
PfamPF003191.4E-263784IPR002100Transcription factor, MADS-box
CDDcd002652.45E-3438103No hitNo description
PRINTSPR004043.5E-285065IPR002100Transcription factor, MADS-box
PRINTSPR004043.5E-286586IPR002100Transcription factor, MADS-box
PfamPF014862.0E-26115199IPR002487Transcription factor, K-box
PROSITE profilePS5129714.503115205IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 475 aa     Download sequence    Send to blast
MVTTAAAPDG DVDQRQQILP AEASKKKGRR GRREMRRIED TTSRQVTFSK RRSGLLKKAY  60
ELSVLCDAEV ALIVFSPRGR LYQFASATDL QNTIDRYLNH TKGTPTNEKV HEPGVEKWKY  120
EVTTLGQKID AIEAYRRKLL GESLGSCSIQ ELQELELQLE KSLSSIRQRK QKKLMDQILE  180
LREKEQKLSK ENAMLRDQCK ALPLLELNDK GRVDAAAGGG EEEEDDVRME DVETELAIGI  240
GRRRPSTVDM DKAIMSNQAG KVLKKGKKKQ AKDELDRQKQ AEKKRRRLEK ALANSAAIIS  300
ELEKKKQKKK EEQQRLDEEG AAIAEAVALH VLIGEDSDEP CHLMLNKHRR CNHWDPSAGF  360
EFTVDAQATD IYPSDGLICA SHATFAPKGR WADWGIGQPM PSWGEVRDLQ GPYYQGTFHQ  420
SVNCPGFIAA QAVSSLKIRE DSSEITSPSQ GAAAATVVNR MLGGTNRLNL YREI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1n6j_A5e-1730101272Myocyte-specific enhancer factor 2B
1n6j_B5e-1730101272Myocyte-specific enhancer factor 2B
1tqe_P5e-1730101373Myocyte-specific enhancer factor 2B
1tqe_Q5e-1730101373Myocyte-specific enhancer factor 2B
1tqe_R5e-1730101373Myocyte-specific enhancer factor 2B
1tqe_S5e-1730101373Myocyte-specific enhancer factor 2B
6c9l_A5e-1730101373Myocyte-specific enhancer factor 2B
6c9l_B5e-1730101373Myocyte-specific enhancer factor 2B
6c9l_C5e-1730101373Myocyte-specific enhancer factor 2B
6c9l_D5e-1730101373Myocyte-specific enhancer factor 2B
6c9l_E5e-1730101373Myocyte-specific enhancer factor 2B
6c9l_F5e-1730101373Myocyte-specific enhancer factor 2B
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1266286KKKQAKDELDRQKQAEKKRRR
2283287KRRRL
3284307RRRLEKALANSAAIISELEKKKQK
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.1G003400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012701695.11e-176MADS-box protein SOC1 isoform X2
TrEMBLK3Z0C20.0K3Z0C2_SETIT; Uncharacterized protein
STRINGSi019985m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38051616
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45660.17e-51AGAMOUS-like 20