PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.1G020800.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family ERF
Protein Properties Length: 201aa    MW: 22012.8 Da    PI: 10.2177
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.1G020800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP224.47.3e-083075755
                 AP2  7 rwdkkrgrWvAeIrdpse.ng...krkrfslgkfgtaeeAakaaiaarkkleg 55
                        +++++rgr       +s+  g   +r+  +lg+f+tae+Aa a++  + +l+g
  Sevir.1G020800.1.p 30 WRRRRRGR-------VSKyHGvrrQRRERWLGTFDTAEDAACAYDITAIELRG 75
                        66777888.......34446665345999**********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103212.576885IPR001471AP2/ERF domain
CDDcd000183.39E-123980No hitNo description
SuperFamilySSF541711.96E-93980IPR016177DNA-binding domain
SMARTSM003805.1E-64089IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.6E-104380IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MNGGVFPVHQ GQEHHGRRRA AVAGGVGKLW RRRRRGRVSK YHGVRRQRRE RWLGTFDTAE  60
DAACAYDITA IELRGPRART FLGADLDLLL KSLHETCGSN ASLPMHVAAA AAKQHSARPM  120
LKEQDIWDGL NEIMMMDDAL EAGMRLGTGR TNACLGDVED GKMRSASVTA RMGQDAGGAD  180
GRRGGDWLDN NEYRGNRMNG *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11634RRRAAVAGGVGKLWRRRRR
24550RQRRER
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.1G020800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004954022.16e-37ethylene-responsive transcription factor ERF112
TrEMBLK3YV481e-35K3YV48_SETIT; Uncharacterized protein
STRINGSi018144m2e-36(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP124236124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12980.12e-09ERF family protein