PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.1G027800.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family ERF
Protein Properties Length: 241aa    MW: 25048.1 Da    PI: 5.3332
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.1G027800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.56.1e-174693152
                 AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkk 52
                        + y+GVr +  +g+Wv+eIr+p++   + r++lg+f t+e Aa+a++aa++ 
  Sevir.1G027800.1.p 46 PSYRGVRMRA-WGKWVSEIREPRK---KSRIWLGTFPTPEIAARAHDAAALV 93
                        57*****998.**********843...6*********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.27E-1846105No hitNo description
PfamPF008473.0E-114693IPR001471AP2/ERF domain
PROSITE profilePS5103222.86647104IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-3047106IPR001471AP2/ERF domain
SMARTSM003801.8E-3347110IPR001471AP2/ERF domain
SuperFamilySSF541712.48E-2047104IPR016177DNA-binding domain
PRINTSPR003675.7E-104859IPR001471AP2/ERF domain
PRINTSPR003675.7E-107086IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MSEGELSSPA SSGGTFSPPQ SPSEAEPRHG RRGGKKRARD GGQKHPSYRG VRMRAWGKWV  60
SEIREPRKKS RIWLGTFPTP EIAARAHDAA ALVVKGPAAV LNFPEMATAL PRPASAAPRD  120
VQAAAARAAA MEPAPTPGAS APAVAALPTS PQVPVAGQLE EDELEAIVEL PPLDEDAAEL  180
VSLGAASFSF HDAAQGSWCV PEWIDDGAGY MAAAHDGLFG LGPDGDHGWT QSVGALLWNL  240
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-1842104972Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.1G027800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7269402e-99KJ726940.1 Zea mays clone pUT3486 AP2-EREBP transcription factor (EREB144) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004951388.11e-167ethylene-responsive transcription factor ERF038
SwissprotQ9LYD33e-51DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLK3YVC61e-165K3YVC6_SETIT; Uncharacterized protein
STRINGSi018222m1e-166(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.15e-30ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]