PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.1G031100.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family TALE
Protein Properties Length: 529aa    MW: 54854.5 Da    PI: 7.4318
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.1G031100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox24.74e-084494871854
                         HHHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
            Homeobox  18 lFek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                         lFe+  ++yp+ +e+  LA + gLt +qV++WF N R +
  Sevir.1G031100.1.p 449 LFENflHPYPKDHEKDVLAGRSGLTRNQVSNWFINARVR 487
                         5776679******************************88 PP
2BELL35.52.6e-12304380272
                BELL   2 rqelqkkkakLlslleeVdkrYkqyveqlqtvissFeava......glgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                         r e q+ k+ Ll+ll+ +d++Y+q+ +++q   + F+a +      g g+  + + +A +a+S  +r L+ +ia+qi
  Sevir.1G031100.1.p 304 RGEAQRVKSDLLKLLQLMDEKYNQCLDEIQSTTAKFNALMhsgggaGGGNGSICAPFAHRAVSAVYRGLRRRIAGQI 380
                         5689999*******************************963333226677899***********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005744.0E-4234378IPR006563POX domain
PfamPF075261.5E-25239377IPR006563POX domain
PROSITE profilePS5007111.305428491IPR001356Homeobox domain
SMARTSM003898.1E-8431495IPR001356Homeobox domain
CDDcd000869.03E-11431492No hitNo description
Gene3DG3DSA:1.10.10.608.5E-25431504IPR009057Homeodomain-like
SuperFamilySSF466891.45E-15432500IPR009057Homeodomain-like
PfamPF059202.6E-15448487IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008285Biological Processnegative regulation of cell proliferation
GO:0009640Biological Processphotomorphogenesis
GO:0010073Biological Processmeristem maintenance
GO:0010227Biological Processfloral organ abscission
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0010371Biological Processregulation of gibberellin biosynthetic process
GO:0090470Biological Processshoot organ boundary specification
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 529 aa     Download sequence    Send to blast
MASNPSMFSP IGVDAMTGGY FMVGGGGGMM SADVPHFHPS VLLEHGGFGF GLGDAAVGAT  60
ATASDLAANN VMLASFASQL VATGPAPQDD LIAGRTPPEE MDEGYGADSG VSCVAANLQC  120
PGHSGGAMAV WPSSSSKKPA GTWSSAGGSR AVSVHAPYHH LTTLPEVAGF HYPLAAAAAA  180
AAAVIAPASS ELSLTLCSKS SPDSALNAAG QCSSGASRSA LTELHPRARS RPAAHFSVVV  240
ARSRYAAVAQ EVLNDVVGHM LNGVADAAAD SCSGIDGGGS AGAPSVVSSS NRLMASSEDA  300
GERRGEAQRV KSDLLKLLQL MDEKYNQCLD EIQSTTAKFN ALMHSGGGAG GGNGSICAPF  360
AHRAVSAVYR GLRRRIAGQI VAAATRATGW GGESSSSVTA AGGDAERSWE SEFIKKHWAA  420
QQLRRGEQQC WRPQRGLPEK SVAVLKAWLF ENFLHPYPKD HEKDVLAGRS GLTRNQVSNW  480
FINARVRLWK PMIEEMYQDL KKSSGVGGQG PAMEPHTSKR RICELEGQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.1G031100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004951423.10.0homeobox protein ATH1
RefseqXP_004951424.10.0homeobox protein ATH1
RefseqXP_004951425.10.0homeobox protein ATH1
RefseqXP_004951426.10.0homeobox protein ATH1
RefseqXP_022680719.10.0homeobox protein ATH1
RefseqXP_022680731.10.0homeobox protein ATH1
RefseqXP_022680746.10.0homeobox protein ATH1
RefseqXP_022680778.10.0homeobox protein ATH1
RefseqXP_022680845.10.0homeobox protein ATH1
TrEMBLK3YRI90.0K3YRI9_SETIT; Uncharacterized protein
STRINGSi016883m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31433365
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32980.12e-56homeobox gene 1