PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.1G034500.2.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family GATA
Protein Properties Length: 263aa    MW: 27682.8 Da    PI: 10.4486
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.1G034500.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.39.1e-18100133134
                GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                         Cs C+ttkTplWR+gp g+k+LCnaCG+++rk +
  Sevir.1G034500.2.p 100 CSDCNTTKTPLWRSGPCGPKSLCNACGIRQRKAR 133
                         *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577162.19E-1391134No hitNo description
SMARTSM004016.9E-1994145IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.26898130IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.5E-1498133IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.25E-1499131No hitNo description
PROSITE patternPS003440100125IPR000679Zinc finger, GATA-type
PfamPF003201.7E-15100133IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MMMSGSDIFP RPPLFRPTIQ SIDGDMIQRS AYDPYDIESK RADGWAVAPP AAKMKIMRKA  60
TSEYPEGGTA RKPRRRAQAH QDESQQQLQQ QQAMGVVRVC SDCNTTKTPL WRSGPCGPKS  120
LCNACGIRQR KARRAMAAAA AAAAAAASNG GTPQAASVAV QAKAPKKEKR ADVDRSLPFK  180
KRCKMVAVDH AVTAAKATPA VAASTKDQDH VSSDKVAAAA TSLQSKAASP PPAAALHVFP  240
AADEVTDAAM LLMTLSCGLV RS*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters (By similarity). Influences the expression of nuclear encoded chloroplast-targeted genes. Regulates chloroplast development and promotes chlorophyll accumulation. Modulates plant architecture (e.g. height, length and width of leaf blades, and flowering tillers production) and represses tillering, probably by modulating number of cells. Promotes senescence. Involved in grain filling, panicle development and starch production (PubMed:23548780). {ECO:0000250|UniProtKB:Q9SZI6, ECO:0000269|PubMed:23548780}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.1G034500.2.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by light, nitrogen, and cytokinin (benzyladenine) treatments, but repressed by darkness and gibberellin (GA). {ECO:0000269|PubMed:23548780}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7280504e-94KJ728050.1 Zea mays clone pUT6196 C2C2-GATA transcription factor (GATA15) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004951451.10.0putative GATA transcription factor 22
SwissprotQ6YW484e-80CGA1_ORYSJ; Protein CYTOKININ-RESPONSIVE GATA TRANSCRIPTION FACTOR 1
TrEMBLA0A368PGQ50.0A0A368PGQ5_SETIT; Uncharacterized protein
STRINGSi019058m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56860.19e-20GATA family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Behringer C,Schwechheimer C
    B-GATA transcription factors - insights into their structure, regulation, and role in plant development.
    Front Plant Sci, 2015. 6: p. 90
    [PMID:25755661]