PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.1G049600.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bZIP
Protein Properties Length: 487aa    MW: 51897.3 Da    PI: 8.8903
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.1G049600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_134.54.3e-11160200343
                         XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNk 43 
                         + k  rr+++NReAAr+sR+RKka+i++Le+    L++  +
  Sevir.1G049600.1.p 160 DAKTLRRLAQNREAARKSRLRKKAYIQNLETSRIRLSQLEQ 200
                         67999*************************86555555444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1703.5E-8158204No hitNo description
SMARTSM003386.4E-5158211IPR004827Basic-leucine zipper domain
PROSITE profilePS502178.979160204IPR004827Basic-leucine zipper domain
PfamPF001701.2E-8161200IPR004827Basic-leucine zipper domain
SuperFamilySSF579597.5E-7162205No hitNo description
PROSITE patternPS000360165180IPR004827Basic-leucine zipper domain
PfamPF141446.3E-27246331IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 487 aa     Download sequence    Send to blast
MGDRPWQQPP EQASYPHAGM IQAASSSAHG GIIRKEPGGG YDMAEFDQAL FLYLNSQDQT  60
SAAHHQDQPQ TLNIFPSQPM HIAEPAPKQG SMGTSNTAPI AGAGPSKQPP PPSNHPSRPT  120
PAALKDGKPA GVKREGSSGA ATGSGTPSTS NQQEGPRTPD AKTLRRLAQN REAARKSRLR  180
KKAYIQNLET SRIRLSQLEQ ELHRSRNQGA VFGGGALSGS NGGLSPEAAW FDMEHARWQE  240
EHGKMMRHLR AALEAADQQH PAAPAPAPAA DAQLRQLVDA AAAHHGVLAD LKAAVASADA  300
FHLVSGAWAS AAERCFLWIG GFRPSELIKV AARHAEPLTE PQAMGVCGVQ QWAREAEAAL  360
DHELQAMHRS VSEAVSSDAA ALLCPYSDVP GYMATMSLAI AKLASLEAFV RQADALRLQA  420
LHRLPQILTA RQAARCFLAI ADYSHRLRAL SELWHTRPRH EPVATIPAAG PSHGQPFQSS  480
RAGGLL*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to as1-like elements (5'-TGACGTAAgggaTGACGCA-3') in promoters of target genes. Regulates transcription in response to plant signaling molecules salicylic acid (SA), methyl jasmonate (MJ) and auxin (2,4D) only in leaves. Prevents lateral branching and may repress defense signaling. {ECO:0000269|PubMed:12777042}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.1G049600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9513162e-57EU951316.1 Zea mays clone 695528 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004951576.10.0transcription factor TGAL9 isoform X1
SwissprotQ52MZ21e-145TGA10_TOBAC; bZIP transcription factor TGA10
TrEMBLA0A368PHT40.0A0A368PHT4_SETIT; Uncharacterized protein
STRINGPavir.J04905.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27323669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06839.31e-101bZIP family protein