PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sevir.1G049600.6.p

Organism

Setaria viridis

Taxonomic ID

4556

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

bZIP

Protein Properties

Length: 351aa MW: 37584 Da PI: 10.1193

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sevir.1G049600.6.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	35.2	2.8e-11	158	198	3	43
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNk 43 + k rr+++NReAAr+sR+RKka+i++Le+ L++ + Sevir.1G049600.6.p 158 DAKTLRRLAQNREAARKSRLRKKAYIQNLETSRIRLSQLEQ 198 67999*************************86555555444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	6.4E-5	156	209	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	2.2E-8	156	202	No hit	No description
PROSITE profile	PS50217	8.979	158	202	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	7.4E-9	159	198	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	4.69E-7	160	203	No hit	No description
PROSITE pattern	PS00036	0	163	178	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	1.7E-26	244	327	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 351 aa Download sequence Send to blast
MGDRPWQQPP EQASYPHAGM IQAASSSAHG GIIKEPGGGY DMAEFDQALF LYLNSQDQTS 60 AAHHQDQPQT LNIFPSQPMH IAEPAPKGSM GTSNTAPIAG AGPSKQPPPP SNHPSRPTPA 120 ALKDGKPAGV KREGSSGAAT GSGTPSTSNQ QEGPRTPDAK TLRRLAQNRE AARKSRLRKK 180 AYIQNLETSR IRLSQLEQEL HRSRNQGAVF GGGALSGSNG GLSPEAAWFD MEHARWQEEH 240 GKMMRHLRAA LEAADQQHPA APAPAPAADA QLRQLVDAAA AHHGVLADLK AAVASADAFH 300 LVSGAWASAA ERCFLWIGGF RPSELIKDSR LDRRWRRGWL TYLQQCKGRA *

Sequence ? help Back to Top

Protein Sequence Length: 351 aa Download sequence Send to blast

MGDRPWQQPP EQASYPHAGM IQAASSSAHG GIIKEPGGGY DMAEFDQALF LYLNSQDQTS  60
AAHHQDQPQT LNIFPSQPMH IAEPAPKGSM GTSNTAPIAG AGPSKQPPPP SNHPSRPTPA  120
ALKDGKPAGV KREGSSGAAT GSGTPSTSNQ QEGPRTPDAK TLRRLAQNRE AARKSRLRKK  180
AYIQNLETSR IRLSQLEQEL HRSRNQGAVF GGGALSGSNG GLSPEAAWFD MEHARWQEEH  240
GKMMRHLRAA LEAADQQHPA APAPAPAADA QLRQLVDAAA AHHGVLADLK AAVASADAFH  300
LVSGAWASAA ERCFLWIGGF RPSELIKDSR LDRRWRRGWL TYLQQCKGRA *

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator involved in defense response. {ECO:0000250\|UniProtKB:Q7X993}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sevir.1G049600.6.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP004184	1e-54	AP004184.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1225_F07.
GenBank	AP014958	1e-54	AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBank	CP012610	1e-54	CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004951577.1	0.0	transcription factor TGAL9 isoform X2
Refseq	XP_004951578.1	0.0	transcription factor TGAL9 isoform X3
Swissprot	Q0E342	1e-122	TGAL9_ORYSJ; Transcription factor TGAL9
TrEMBL	A0A368PGX7	0.0	A0A368PGX7_SETIT; Uncharacterized protein
STRING	Pavir.J04905.1.p	1e-167	(Panicum virgatum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06839.3	2e-59	bZIP family protein

Link Out ? help Back to Top
Phytozome	Sevir.1G049600.6.p

Publications ? help Back to Top
Chern M, et al. Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins. BMC Genomics, 2014. 15: p. 461 [PMID:24919709]