PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sevir.1G049600.7.p

Organism

Setaria viridis

Taxonomic ID

4556

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

bZIP

Protein Properties

Length: 352aa MW: 37740.2 Da PI: 10.2388

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sevir.1G049600.7.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	35.1	2.8e-11	159	199	3	43
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNk 43 + k rr+++NReAAr+sR+RKka+i++Le+ L++ + Sevir.1G049600.7.p 159 DAKTLRRLAQNREAARKSRLRKKAYIQNLETSRIRLSQLEQ 199 67999*************************86555555444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	6.4E-5	157	210	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	2.2E-8	157	203	No hit	No description
PROSITE profile	PS50217	8.979	159	203	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	7.5E-9	160	199	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	4.75E-7	161	204	No hit	No description
PROSITE pattern	PS00036	0	164	179	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	1.7E-26	245	328	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 352 aa Download sequence Send to blast
MGDRPWQQPP EQASYPHAGM IQAASSSAHG GIIRKEPGGG YDMAEFDQAL FLYLNSQDQT 60 SAAHHQDQPQ TLNIFPSQPM HIAEPAPKGS MGTSNTAPIA GAGPSKQPPP PSNHPSRPTP 120 AALKDGKPAG VKREGSSGAA TGSGTPSTSN QQEGPRTPDA KTLRRLAQNR EAARKSRLRK 180 KAYIQNLETS RIRLSQLEQE LHRSRNQGAV FGGGALSGSN GGLSPEAAWF DMEHARWQEE 240 HGKMMRHLRA ALEAADQQHP AAPAPAPAAD AQLRQLVDAA AAHHGVLADL KAAVASADAF 300 HLVSGAWASA AERCFLWIGG FRPSELIKDS RLDRRWRRGW LTYLQQCKGR A*

Sequence ? help Back to Top

Protein Sequence Length: 352 aa Download sequence Send to blast

MGDRPWQQPP EQASYPHAGM IQAASSSAHG GIIRKEPGGG YDMAEFDQAL FLYLNSQDQT  60
SAAHHQDQPQ TLNIFPSQPM HIAEPAPKGS MGTSNTAPIA GAGPSKQPPP PSNHPSRPTP  120
AALKDGKPAG VKREGSSGAA TGSGTPSTSN QQEGPRTPDA KTLRRLAQNR EAARKSRLRK  180
KAYIQNLETS RIRLSQLEQE LHRSRNQGAV FGGGALSGSN GGLSPEAAWF DMEHARWQEE  240
HGKMMRHLRA ALEAADQQHP AAPAPAPAAD AQLRQLVDAA AAHHGVLADL KAAVASADAF  300
HLVSGAWASA AERCFLWIGG FRPSELIKDS RLDRRWRRGW LTYLQQCKGR A*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator involved in defense response. {ECO:0000250\|UniProtKB:Q7X993}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sevir.1G049600.7.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP004184	1e-54	AP004184.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1225_F07.
GenBank	AP014958	1e-54	AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBank	CP012610	1e-54	CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004951577.1	0.0	transcription factor TGAL9 isoform X2
Swissprot	Q0E342	1e-124	TGAL9_ORYSJ; Transcription factor TGAL9
TrEMBL	A0A368PHI6	0.0	A0A368PHI6_SETIT; Uncharacterized protein
STRING	Pavir.J04905.1.p	1e-166	(Panicum virgatum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06839.3	3e-60	bZIP family protein

Link Out ? help Back to Top
Phytozome	Sevir.1G049600.7.p

Publications ? help Back to Top
Chern M, et al. Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins. BMC Genomics, 2014. 15: p. 461 [PMID:24919709]