PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.1G055400.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family ERF
Protein Properties Length: 200aa    MW: 21259.8 Da    PI: 6.8994
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.1G055400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.31e-191565155
                 AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                        s+++GVr ++ +gr++AeIrdp    k++r++lg+f++ae+Aa+a++aa++ l+g
  Sevir.1G055400.1.p 15 SRFRGVRKRP-WGRYAAEIRDPA---KKARVWLGTFDSAEDAARAYDAAARMLRG 65
                        789*******.**********83...36************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.23E-181573No hitNo description
SuperFamilySSF541711.7E-221574IPR016177DNA-binding domain
PfamPF008473.1E-131565IPR001471AP2/ERF domain
SMARTSM003804.1E-361679IPR001471AP2/ERF domain
PROSITE profilePS5103223.4331673IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.8E-321673IPR001471AP2/ERF domain
PRINTSPR003673.0E-101728IPR001471AP2/ERF domain
PRINTSPR003673.0E-103955IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MRRGGAEAAD FDVESRFRGV RKRPWGRYAA EIRDPAKKAR VWLGTFDSAE DAARAYDAAA  60
RMLRGPKAKT NFPLPAAAHH HHMPAAYTPY TTPGVSTPPV AMPACSSLSS TVESFNGARQ  120
RPVLPPRPPP PPIPDDDCRS DCGSSASVVD DDCTDAAASP SCRLPLPFDL NLPAGSGCGA  180
GVGWYGDEED EIRLTALRL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-211774664ATERF1
3gcc_A3e-211774664ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional repressor and may regulate other AtERFs (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00194DAPTransfer from AT1G50640Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.1G055400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7282061e-84KJ728206.1 Zea mays clone pUT6482 AP2-EREBP transcription factor (EREB138) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004951621.11e-142ethylene-responsive transcription factor 3-like
SwissprotQ9SXS82e-30ERF3_TOBAC; Ethylene-responsive transcription factor 3
TrEMBLA0A368PHF41e-141A0A368PHF4_SETIT; Uncharacterized protein
STRINGPavir.Ab00660.1.p1e-88(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51232758
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50640.17e-23ethylene responsive element binding factor 3