PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.1G075700.2.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family ARF
Protein Properties Length: 873aa    MW: 96301.5 Da    PI: 6.1432
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.1G075700.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B377.21.8e-2499200199
                         EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                         f+k+lt sd++++g +++p++ ae+        +++++  ++l+ +d++g++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F  
  Sevir.1G075700.2.p  99 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfnQQPPA--QELIAKDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI- 186
                         99*****************************8444443..48************************************************. PP

                         -SSSEE..EEEEE-S CS
                  B3  85 dgrsefelvvkvfrk 99 
                          ++++ +l+++++r+
  Sevir.1G075700.2.p 187 -WNDNNQLLLGIRRA 200
                         .7777778***9997 PP
2Auxin_resp119.23.3e-39225308183
          Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                         aahaast+s F+++YnPras+ eFv++++k++ka++ +++svGmRf+m fete+ss rr++Gt++g+sdldpvrWpnS+Wrs+k
  Sevir.1G075700.2.p 225 AAHAASTNSRFTIFYNPRASPCEFVIPLAKYVKAVYhTRISVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVK 308
                         79*********************************9789******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.75E-4884228IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.3E-4391214IPR015300DNA-binding pseudobarrel domain
CDDcd100171.66E-2298199No hitNo description
PROSITE profilePS5086313.35299201IPR003340B3 DNA binding domain
PfamPF023626.4E-2399200IPR003340B3 DNA binding domain
SMARTSM010191.6E-2599201IPR003340B3 DNA binding domain
PfamPF065075.4E-34225308IPR010525Auxin response factor
PfamPF023096.3E-8730825IPR033389AUX/IAA domain
SuperFamilySSF542773.14E-8731818No hitNo description
PROSITE profilePS5174524.683740824IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 873 aa     Download sequence    Send to blast
MRVPGLLFRC LRLVVGWCIF LKATVAASTN KEMESQIPNY PSLPPQLICQ LHNVTMHADA  60
ETDEVYAQMT LQPLSPQELK DPFLPAELGG ASKQPTNYFC KTLTASDTST HGGFSVPRRA  120
AEKVFPPLDF NQQPPAQELI AKDLHGNEWK FRHIFRGQPK RHLLTTGWSV FVSAKRLVAG  180
DSVLFIWNDN NQLLLGIRRA NRPQTVMPSS VLSSDSMHIG LLAAAAHAAS TNSRFTIFYN  240
PRASPCEFVI PLAKYVKAVY HTRISVGMRF RMLFETEESS VRRYMGTITG ISDLDPVRWP  300
NSHWRSVKVG WDESTAGEKQ PRVSLWEIEP LTTFPMYPSP FALGLKRPWP TGLPSLYGGR  360
DDGLTSSLMW LRDGTNPSFQ SLNFGGLGTS PSPWMQPRMD NSLLGLQSDM YQTIAAAAAL  420
QGTTKQISPS LMQFQQPQNI VGRSALLSNQ IMQQVQPQFQ QMYNQNINDN TVQGHTQAEY  480
LQQQLQRCHS FSEQKPQLHP QQQRQESQQQ QECVQTPQNQ QLHCLPNALS AFSQLSSVTQ  540
SPSSTLPAVP AFSHQQNFAD TNISALSPSG GSSMQGMLGQ LPSDAPSSLP CVARNTPLSI  600
SDPWSSKRVA VESVNPSRPH VVSAQIEQLD MTPCNLPQNS ALAPLPGRGC LVDQDESSDP  660
QNHLLFGVNI DSQSLLMQGG IPGHQNDNDS STIPYSTSNF LSPSQNDFPL GQPLPSTGCL  720
DESSYVPSAE NSEQANQQFA TFVKVYKSGT VGRLLDITRF SSYDELRSEV GRLFGLEGQL  780
EDPLRSGWQL VFVDGEDDVL LVGDDPWQEF VNSVSCIKIL SLEEVQQMGK QGIELLSSAP  840
ARRLSNGCDS YVSRQESKNL STGMTPVGSV EF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1392532984388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.1G075700.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004951872.10.0auxin response factor 6 isoform X2
SwissprotA2X1A10.0ARFF_ORYSI; Auxin response factor 6
SwissprotQ6H6V40.0ARFF_ORYSJ; Auxin response factor 6
TrEMBLK3YPS00.0K3YPS0_SETIT; Auxin response factor
STRINGSi016262m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.10.0auxin response factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]