PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.1G075700.3.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family ARF
Protein Properties Length: 841aa    MW: 92726.1 Da    PI: 5.7046
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.1G075700.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B377.31.7e-2467168199
                         EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                         f+k+lt sd++++g +++p++ ae+        +++++  ++l+ +d++g++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F  
  Sevir.1G075700.3.p  67 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfnQQPPA--QELIAKDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI- 154
                         99*****************************8444443..48************************************************. PP

                         -SSSEE..EEEEE-S CS
                  B3  85 dgrsefelvvkvfrk 99 
                          ++++ +l+++++r+
  Sevir.1G075700.3.p 155 -WNDNNQLLLGIRRA 168
                         .7777778***9997 PP
2Auxin_resp119.33.1e-39193276183
          Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                         aahaast+s F+++YnPras+ eFv++++k++ka++ +++svGmRf+m fete+ss rr++Gt++g+sdldpvrWpnS+Wrs+k
  Sevir.1G075700.3.p 193 AAHAASTNSRFTIFYNPRASPCEFVIPLAKYVKAVYhTRISVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVK 276
                         79*********************************9789******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.62E-4852196IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.0E-4359182IPR015300DNA-binding pseudobarrel domain
CDDcd100171.54E-2266167No hitNo description
SMARTSM010191.6E-2567169IPR003340B3 DNA binding domain
PfamPF023626.1E-2367168IPR003340B3 DNA binding domain
PROSITE profilePS5086313.35267169IPR003340B3 DNA binding domain
PfamPF065075.1E-34193276IPR010525Auxin response factor
PfamPF023096.0E-8698793IPR033389AUX/IAA domain
SuperFamilySSF542773.01E-8699786No hitNo description
PROSITE profilePS5174524.683708792IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 841 aa     Download sequence    Send to blast
MESQIPNYPS LPPQLICQLH NVTMHADAET DEVYAQMTLQ PLSPQELKDP FLPAELGGAS  60
KQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDFNQ QPPAQELIAK DLHGNEWKFR  120
HIFRGQPKRH LLTTGWSVFV SAKRLVAGDS VLFIWNDNNQ LLLGIRRANR PQTVMPSSVL  180
SSDSMHIGLL AAAAHAASTN SRFTIFYNPR ASPCEFVIPL AKYVKAVYHT RISVGMRFRM  240
LFETEESSVR RYMGTITGIS DLDPVRWPNS HWRSVKVGWD ESTAGEKQPR VSLWEIEPLT  300
TFPMYPSPFA LGLKRPWPTG LPSLYGGRDD GLTSSLMWLR DGTNPSFQSL NFGGLGTSPS  360
PWMQPRMDNS LLGLQSDMYQ TIAAAAALQG TTKQISPSLM QFQQPQNIVG RSALLSNQIM  420
QQVQPQFQQM YNQNINDNTV QGHTQAEYLQ QQLQRCHSFS EQKPQLHPQQ QRQESQQQQE  480
CVQTPQNQQL HCLPNALSAF SQLSSVTQSP SSTLPAVPAF SHQQNFADTN ISALSPSGGS  540
SMQGMLGQLP SDAPSSLPCV ARNTPLSISD PWSSKRVAVE SVNPSRPHVV SAQIEQLDMT  600
PCNLPQNSAL APLPGRGCLV DQDESSDPQN HLLFGVNIDS QSLLMQGGIP GHQNDNDSST  660
IPYSTSNFLS PSQNDFPLGQ PLPSTGCLDE SSYVPSAENS EQANQQFATF VKVYKSGTVG  720
RLLDITRFSS YDELRSEVGR LFGLEGQLED PLRSGWQLVF VDGEDDVLLV GDDPWQEFVN  780
SVSCIKILSL EEVQQMGKQG IELLSSAPAR RLSNGCDSYV SRQESKNLST GMTPVGSVEF  840
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-137329794388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.1G075700.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004951871.10.0auxin response factor 6 isoform X1
SwissprotA2X1A10.0ARFF_ORYSI; Auxin response factor 6
SwissprotQ6H6V40.0ARFF_ORYSJ; Auxin response factor 6
TrEMBLK3YPS00.0K3YPS0_SETIT; Auxin response factor
STRINGSi016262m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.20.0auxin response factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]