PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.1G089100.2.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family ARF
Protein Properties Length: 1065aa    MW: 118709 Da    PI: 6.2944
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.1G089100.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B366.92.9e-2171172199
                         EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                         f+k+lt sd++++g +++p++ ae++      +++++  ++l+ +d +  +W++++i+r++++r++lt+GW+ Fv  ++L +gD+v+F   
  Sevir.1G089100.2.p  71 FCKTLTASDTSTHGGFSVPRRAAEKIlppldfNMQPPA-QELQARDIHDTVWTFRHIFRGQPKRHLLTTGWSLFVGGKRLFAGDSVIFV-- 158
                         99*****************************9555544.49************************************************.. PP

                         SSSEE..EEEEE-S CS
                  B3  86 grsefelvvkvfrk 99 
                         ++++++l+++++r+
  Sevir.1G089100.2.p 159 RDERQQLLLGIRRA 172
                         4577888****997 PP
2Auxin_resp117.51.1e-38197280183
          Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                         aahaa+++s+F+++YnPras++eFv++++k++kal+ +++s+GmRf+m+fete+   rr++Gt++g+sdldpvrW+nS+Wr+L+
  Sevir.1G089100.2.p 197 AAHAAANNSPFTIFYNPRASPTEFVIPFAKYQKALYsNQISLGMRFRMMFETEELGMRRYMGTITGISDLDPVRWKNSQWRNLQ 280
                         79*********************************989********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.14E-4060200IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.5E-3964186IPR015300DNA-binding pseudobarrel domain
CDDcd100178.89E-1870162No hitNo description
SMARTSM010193.2E-2071173IPR003340B3 DNA binding domain
PROSITE profilePS5086311.49171173IPR003340B3 DNA binding domain
PfamPF023627.5E-1971172IPR003340B3 DNA binding domain
PfamPF065071.4E-33197280IPR010525Auxin response factor
PfamPF023094.3E-99291016IPR033389AUX/IAA domain
PROSITE profilePS5174528.3219311015IPR000270PB1 domain
SuperFamilySSF542771.63E-79481010No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1065 aa     Download sequence    Send to blast
MQKDIDAHVP SYPNLPSKLI CLLHSVTLHA DPDTDEVYAQ MTLQPVNTYG KEALQLSELA  60
LKHARPQMEF FCKTLTASDT STHGGFSVPR RAAEKILPPL DFNMQPPAQE LQARDIHDTV  120
WTFRHIFRGQ PKRHLLTTGW SLFVGGKRLF AGDSVIFVRD ERQQLLLGIR RASRQPTNIS  180
SSVLSSDSMH IGVLAAAAHA AANNSPFTIF YNPRASPTEF VIPFAKYQKA LYSNQISLGM  240
RFRMMFETEE LGMRRYMGTI TGISDLDPVR WKNSQWRNLQ VGWDESAAGE RRNRVSMWEI  300
EPIAAPFFIC PQPFFGVKRP RQLDDESSEM ENLFKRAMPW LGEEICIKDA QTQNTTMPGL  360
SLVQWMNMNR QQNSTLANTG IQSEYLRSLS NPAMQNLGAT ELARQLYVQN HLLQQNSAQL  420
NASKLPQQMQ PINELSKGVL SFNQLDVITN QEQKQEAGNQ QRQQQASNQA IPLSQAQASL  480
AQAQVIIQNQ MQQQQQQHLS PTKNEQGTSD QQLLLSQQQQ DQNLQLQQHQ QLLLQQLQRQ  540
QQHNQQLNKL PGQLVNLAGQ QTQLSDQELQ LQLLQKLQQQ ALISQPAVTL SRLPLIQEQQ  600
KLLLDMQQLS GSRSLAQQRI MPQQDSKVSL QASPSPPPMK PEQQQKLSQK QVALADMSDV  660
AFPSITPTNV VSKAGSSLMI PGAAQSVLTE ELPSCSTSPS TANGNHLAHP NIGRNDHCKV  720
NTEKVPQSSA LMSIPTSVEA VTAAPVMAKE LLNHNVKENV ITSKSPTCGT GPDNLLNIVP  780
STDNLETASS ATSLWPTQTD GLLHQGFPTS NFNQQQMFKD ALPDVEIQDV DPTNNAFFGI  840
SNDGPLGFPM ETEGLLVSAL NPVKCQTHMS TDVENNYRIQ KDAQQEISTS MVSQSFGQSD  900
IAFNSIDSAI NDGALLNRNS WPPAPPPQRM RTFTKVYKRG AVGRSIDIGR YAGYEELKHA  960
LARMFGIEGQ LEDRQRIGWK LVYKDHEDDI LLLGDDPWEE FVNCVKCIRI LSPQEVQQMS  1020
LDGDLGNNVL SNQACSSSDG GNAWRPRCDQ NPGNPSIGFY DQFE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-139230189388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.1G089100.2.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by auxin under light condition. {ECO:0000269|PubMed:17408882}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM0045350.0HM004535.1 Zea mays auxin response factor 20 (ARF20) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004951920.10.0auxin response factor 5
SwissprotQ6Z2W30.0ARFE_ORYSJ; Auxin response factor 5
TrEMBLK3YPF50.0K3YPF5_SETIT; Auxin response factor
STRINGSi016147m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19