PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.1G090100.4.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family SBP
Protein Properties Length: 469aa    MW: 50051.9 Da    PI: 9.5949
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.1G090100.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP130.55.9e-41172248278
                         -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                 SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                         CqvegC+ dls+ak+yhr+hkvCe+hskap+v+v+gle+rfCqqCsrfh l+ fD++krsCrrrL++hn+rrrk+q+
  Sevir.1G090100.4.p 172 CQVEGCKIDLSSAKDYHRKHKVCEAHSKAPKVVVAGLERRFCQQCSRFHGLDVFDQKKRSCRRRLNDHNARRRKPQP 248
                         **************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.108.5E-33165233IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.761169246IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.83E-38171251IPR004333Transcription factor, SBP-box
PfamPF031101.9E-31172245IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 469 aa     Download sequence    Send to blast
MGSFGMDWSQ KGSVLWDWEN LPPIGANGNL VPQAEAKFAG VEVTRHGSVH SSCGTFSSSS  60
EMGYGSSKSS ISASIDSSPK AGNNMELNFA PARVPDKYIG KNTDLRTSPS SVIAVSSGEP  120
VLSLKLGKRT YFEDACGGQS VKSSPSDSSI VTPPAAPVKK AKAAQNVQNS YCQVEGCKID  180
LSSAKDYHRK HKVCEAHSKA PKVVVAGLER RFCQQCSRFH GLDVFDQKKR SCRRRLNDHN  240
ARRRKPQPEA ISFGSSRLPA MFYGTDPRQQ TSLLFGQAPY GQMRSRASSS WDNPGGAFKF  300
AETKASWLKP AGATGLDALH LSSQQVWNNI MPHGAHQDFA GFMAFKGTSA KVLNQGVEAS  360
VVASDSNGNP DLQRALSLLS NNSADAGNNQ PTTQLHPGLS ALASTSNAVM QQASPLGLWQ  420
DGTALDLHAR FQALDPMGNG SAIAAAHEPQ LPRPPSYNGS SSHYDLTR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A4e-271722451184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1227244KKRSCRRRLNDHNARRRK
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.1G090100.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004951927.10.0squamosa promoter-binding-like protein 3 isoform X2
RefseqXP_004951928.10.0squamosa promoter-binding-like protein 3 isoform X2
SwissprotA2X0Q61e-172SPL3_ORYSI; Squamosa promoter-binding-like protein 3
SwissprotA3A2Z81e-172SPL3_ORYSJ; Squamosa promoter-binding-like protein 3
TrEMBLA0A368PKH90.0A0A368PKH9_SETIT; Uncharacterized protein
STRINGPavir.Aa03225.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43270.32e-42squamosa promoter binding protein-like 2