PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.1G102800.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family GATA
Protein Properties Length: 362aa    MW: 38719.4 Da    PI: 6.9657
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.1G102800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA60.22.7e-19267300134
                GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                         Cs+C +t+Tp+WR gpdg+ tLCnaCG++y+ ++
  Sevir.1G102800.1.p 267 CSHCASTETPQWRAGPDGPGTLCNACGIRYKMNK 300
                         *******************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.0E-18261315IPR000679Zinc finger, GATA-type
PROSITE profilePS5011413.323261299IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.71E-15263324No hitNo description
Gene3DG3DSA:3.30.50.101.3E-15265301IPR013088Zinc finger, NHR/GATA-type
CDDcd002029.62E-18266322No hitNo description
PfamPF003203.0E-17267301IPR000679Zinc finger, GATA-type
PROSITE patternPS003440267292IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MREHRFLYDF PDVADCEGSC VGGGGPPCLL HAGLCCPDDP LETIMDNPDV FSDDLLEDLF  60
IAAALPPPHR GWLPITIGGG GERVVDVDGA DVGYRDRGGA SSDDGAPRLP PSDAMSADDS  120
SWTTSSVATK SPPSSRLPAH AAMSDSSWTP SSLETESPPP PPPRMPVHAA ALSDSSWAPS  180
SLETESSPPS VSRLVVPRKK RDSSVKRGKR LWSLDIPNVP ASSDNPSGRD DGDQDGRRNI  240
IHGGGGGVRQ RLLIARPPRN SRTQRACSHC ASTETPQWRA GPDGPGTLCN ACGIRYKMNK  300
LLPEYRPSTS PSFRSDKHSN RHRKVVKLRE KVKVEKIVNM PLAPADCGGD FMDVCKYIST  360
G*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.1G102800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004954732.10.0GATA transcription factor 2
TrEMBLA0A368PJ620.0A0A368PJ62_SETIT; Uncharacterized protein
STRINGSi019572m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP127772434
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25830.19e-23GATA transcription factor 12