PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sevir.1G130300.1.p

Organism

Setaria viridis

Taxonomic ID

4556

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

GeBP

Protein Properties

Length: 591aa MW: 63117.9 Da PI: 9.2956

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sevir.1G130300.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	38.4	3.4e-12	256	345	2	97
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfk.vsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifel 91 ++qrlw+++De+ +L +l ++ g+ p+ d + +v ++++ k + s++ eK+r+LK +++k v++ ++ ske++ +i++l Sevir.1G130300.1.p 256 RAQRLWTKNDEMKVLEALAGHVKSDGTLPKTD--FLLATVGDRLDRKnCTYSDIYEKVRQLKGRYEKAVST-----GIVPSKEDELQIYKL 339 57*****************99999877655..68999999998652788**************99.....6777888899* PP DUF573 92 skkiWg 97 s+ +Wg Sevir.1G130300.1.p 340 SEAVWG 345 ***8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	1.5E-15	258	345	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 591 aa Download sequence Send to blast
MSRKRRAPPP PPPQESSSEE SGSVEEEEEE PPSHPARRMP PPAAAADGAD SSEGSGSDSD 60 SDTDAQAFQM RQLHHFPTKL PPHLVPQPAS HAAAAADDDD EGESSESESE PENPEPVVQK 120 KAAAAGKSKA EQERKRPAAD PAPSGKAKKA KAGAEKAAAP AEATPPGKAK KGKAESEKAA 180 PEAPPAGKAK KGKAEQEKVV PEATPASKVK KGKAEGEKAA SEDTPSVKGK KGGGKLEKPG 240 VLDSSPSSSK PEKLPRAQRL WTKNDEMKVL EALAGHVKSD GTLPKTDFLL ATVGDRLDRK 300 NCTYSDIYEK VRQLKGRYEK AVSTGIVPSK EDELQIYKLS EAVWGEKAKE ALAAARSQND 360 GAVTKSKKGQ SNKQKVDGNS KGGTPKEAAA STASQNGDSQ KGSKKGQAIK EKTDRDVKSR 420 LSKEATATGT PSKSKKWDNQ NEELDKDAKS GDLGKSKREK TDKGKKDIDR DSLKSKEAAA 480 ANQNGGTLTK NKEGETHDDE VERDANVEVT RRGFDELQGL YSNLAAYVEE IEAQNPCGET 540 LKRAFEFIGD EKAQSLEYKV KRQRVSEAKA QLRRADVKKD VLNTLMSLVD *

Sequence ? help Back to Top

Protein Sequence Length: 591 aa Download sequence Send to blast

MSRKRRAPPP PPPQESSSEE SGSVEEEEEE PPSHPARRMP PPAAAADGAD SSEGSGSDSD  60
SDTDAQAFQM RQLHHFPTKL PPHLVPQPAS HAAAAADDDD EGESSESESE PENPEPVVQK  120
KAAAAGKSKA EQERKRPAAD PAPSGKAKKA KAGAEKAAAP AEATPPGKAK KGKAESEKAA  180
PEAPPAGKAK KGKAEQEKVV PEATPASKVK KGKAEGEKAA SEDTPSVKGK KGGGKLEKPG  240
VLDSSPSSSK PEKLPRAQRL WTKNDEMKVL EALAGHVKSD GTLPKTDFLL ATVGDRLDRK  300
NCTYSDIYEK VRQLKGRYEK AVSTGIVPSK EDELQIYKLS EAVWGEKAKE ALAAARSQND  360
GAVTKSKKGQ SNKQKVDGNS KGGTPKEAAA STASQNGDSQ KGSKKGQAIK EKTDRDVKSR  420
LSKEATATGT PSKSKKWDNQ NEELDKDAKS GDLGKSKREK TDKGKKDIDR DSLKSKEAAA  480
ANQNGGTLTK NKEGETHDDE VERDANVEVT RRGFDELQGL YSNLAAYVEE IEAQNPCGET  540
LKRAFEFIGD EKAQSLEYKV KRQRVSEAKA QLRRADVKKD VLNTLMSLVD *

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	558	563	KVKRQR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sevir.1G130300.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004952276.1	0.0	hepatoma-derived growth factor-related protein 2
TrEMBL	A0A368PK57	0.0	A0A368PK57_SETIT; Uncharacterized protein
STRING	Si016765m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7289	27	37

Link Out ? help Back to Top
Phytozome	Sevir.1G130300.1.p