PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.1G145900.2.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bHLH
Protein Properties Length: 304aa    MW: 33109.8 Da    PI: 7.7157
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.1G145900.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.75.6e-101766154
                        CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH  1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                        r++ +  rE+ RRd++N+ f+eL   l ++     ++++Ka+iL  +++ +k+L
  Sevir.1G145900.2.p 17 RKVQKADREKMRRDKLNEQFQELGNTLDPD----RPRNDKATILGDTIQMLKDL 66
                        5677889********************997....799***************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.03E-131386IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.07E-61466No hitNo description
PROSITE profilePS5088812.91666IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.7E-131689IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.7E-81766IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.5E-72272IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MIDQRTECKA QGPSSARKVQ KADREKMRRD KLNEQFQELG NTLDPDRPRN DKATILGDTI  60
QMLKDLTSHV NKLKAEYTSL SEEARELTQE KNELRDEKAS LKSEVDNLTN QYQQRMRVLY  120
PWAGMEPSVV IGPPPAYPYP VPVPIPSGAV PMHPQLQAYP FFRSQTSGTI PNACTPYMAY  180
TQPCHPPTDQ PSNQPNSPVA NSSSHRSNSP ARDCRSKSST LQQASCGVRT SDVGDVATDL  240
ELKTPGSSGP SHSEIANKDS SSDLKTKKQC IKQINCSSIT EGTSSSRCSS SGPPDVSNSV  300
GDG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.1G145900.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9755130.0EU975513.1 Zea mays clone 491262 helix-loop-helix DNA-binding domain containing protein mRNA, complete cds.
GenBankHQ8587870.0HQ858787.1 Zea mays clone UT1801 bHLH transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004952384.10.0transcription factor bHLH121
TrEMBLK3YU580.0K3YU58_SETIT; Uncharacterized protein
STRINGSi017804m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19860.13e-68bHLH family protein