PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sevir.1G147100.1.p

Organism

Setaria viridis

Taxonomic ID

4556

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

M-type_MADS

Protein Properties

Length: 164aa MW: 17921.2 Da PI: 4.5408

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sevir.1G147100.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	24.4	3.7e-08	3	44	8	49
HHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 8 nrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 ++q++fs R n++l A+ LS +a vavi fs+tg+ + y Sevir.1G147100.1.p 3 QNQTSFSERTNTLLSMAKDLSQEFGAHVAVIEFSPTGEPKAY 44 68***********************************97665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	9.615	1	48	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	2.09E-9	3	73	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	2.9E-8	4	44	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 164 aa Download sequence Send to blast
MAQNQTSFSE RTNTLLSMAK DLSQEFGAHV AVIEFSPTGE PKAYGAPTAD SILRTCLPEI 60 HSSPFQACSE TMGEATARVD GMKREAEETA FLDVVERARQ ATSLMKILAA QASVGKQNWW 120 EVDVEALGVD ELPVFVTALD VLRTDVQRHL DAMESSRKEK MQS*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sevir.1G147100.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004967110.1	5e-77	uncharacterized protein LOC101775407
TrEMBL	A0A368PLE6	2e-98	A0A368PLE6_SETIT; Uncharacterized protein
STRING	Si019649m	1e-111	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7989	5	12

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24840.1	8e-10	AGAMOUS-like 61

Link Out ? help Back to Top
Phytozome	Sevir.1G147100.1.p