PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sevir.1G161700.1.p

Organism

Setaria viridis

Taxonomic ID

4556

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

FAR1

Protein Properties

Length: 350aa MW: 40264.1 Da PI: 8.8897

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sevir.1G161700.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	22.2	4.7e-07	36	89	38	91
FAR1 38 egkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 eg+ ++ek++ ++ + +++++r+g a kvk++k ++w+ +++e+ HnH+l p Sevir.1G161700.1.p 36 EGFLKTEKEN-NQPQIEKTSKRVGYPAYAKVKEDKkGKQWYFDHVEEAHNHKLHP 89 6777888877.89999***************998999***********975 PP
2	FAR1	30.8	9.8e-10	204	290	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.....dgkwevtkleleHn 86 +f+ YA+ +GFs+++s+ k+ +r ++Cs+egk + k ++ + +++++ +++C+a+lk + + + +++k +l H Sevir.1G161700.1.p 204 QFFMGYAELAGFSMKMSNRKT-------FSRVMRCSCEGKGDYYKGDEALRVQNKMTMKMKCNAHLKFMRVYdsegnEVDMVIEKANLFHI 287 69**********9987554.......5899*********9999999***********98877664323233456677777788 PP FAR1 87 Hel 89 H l Sevir.1G161700.1.p 288 HLL 290 876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	9.2E-6	204	290	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 350 aa Download sequence Send to blast
MGYPITVGSR TGGDDSIITA GLALKPVVMM DTIIAEGFLK TEKENNQPQI EKTSKRVGYP 60 AYAKVKEDKK GKQWYFDHVE EAHNHKLHPS PRMVRNAEQA REGRDGDLDK LFQFCRECKE 120 STKYFYWDVN FDPKTKVLRS IFWSHTSQRA ECKDFGDVIM FDTTHKTNSI FVGANYNPKN 180 KESMDPELIP RKGMSFHSEA EAKQFFMGYA ELAGFSMKMS NRKTFSRVMR CSCEGKGDYY 240 KGDEALRVQN KMTMKMKCNA HLKFMRVYDS EGNEVDMVIE KANLFHIHLL QTPLKTKQMR 300 SHKSTELILY QIFDELQAAG VSMQSIKNVL QNMHGVELVP ITAWDIENR*

Sequence ? help Back to Top

Protein Sequence Length: 350 aa Download sequence Send to blast

MGYPITVGSR TGGDDSIITA GLALKPVVMM DTIIAEGFLK TEKENNQPQI EKTSKRVGYP  60
AYAKVKEDKK GKQWYFDHVE EAHNHKLHPS PRMVRNAEQA REGRDGDLDK LFQFCRECKE  120
STKYFYWDVN FDPKTKVLRS IFWSHTSQRA ECKDFGDVIM FDTTHKTNSI FVGANYNPKN  180
KESMDPELIP RKGMSFHSEA EAKQFFMGYA ELAGFSMKMS NRKTFSRVMR CSCEGKGDYY  240
KGDEALRVQN KMTMKMKCNA HLKFMRVYDS EGNEVDMVIE KANLFHIHLL QTPLKTKQMR  300
SHKSTELILY QIFDELQAAG VSMQSIKNVL QNMHGVELVP ITAWDIENR*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sevir.1G161700.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A368QF34	5e-95	A0A368QF34_SETIT; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7609	10	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G06250.1	2e-07	FAR1-related sequence 7

Link Out ? help Back to Top
Phytozome	Sevir.1G161700.1.p