PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sevir.1G165400.1.p

Organism

Setaria viridis

Taxonomic ID

4556

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

Trihelix

Protein Properties

Length: 372aa MW: 42500.3 Da PI: 6.8458

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sevir.1G165400.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	52.7	1.2e-16	82	174	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgk......lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdq 84 +W ++ ++L+ a++++++++ ++ +++++W+ vs +m +rgf sp+qC++k+ +lnk+yk ++e+ + + +++ +++ ++++q Sevir.1G165400.1.p 82 KWNGDMAKLLVSAVSYIDDDIDADHgsrsrvKRMGKWKLVSWAMTKRGFAASPQQCEDKFHDLNKKYKSLTEILGWGtACGIVEKPALLEQ 172 7************888888875444555699**************************************999845999999999999 PP trihelix 85 le 86 ++ Sevir.1G165400.1.p 173 MN 174 85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	2.1E-14	80	198	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 372 aa Download sequence Send to blast
MEGNLRPHAL TPGGAPSNME QPLCFVSQPQ QVGVQANQVA FTAPAVNQMQ EIENGIKASL 60 SFNNEPRGRA TASASQRQRR VKWNGDMAKL LVSAVSYIDD DIDADHGSRS RVKRMGKWKL 120 VSWAMTKRGF AASPQQCEDK FHDLNKKYKS LTEILGWGTA CGIVEKPALL EQMNLSDKLK 180 DEARKLLSSK NLHYEEMCSY HNRNRQCLLD DPSLQRMLWS MARGSPVEQG MEFPTGYGED 240 DHIVLSVDKE EGGDEFNDDP EGSTEDHHHQ RVHGTKMLKH DREEGSHLSQ DAANDMKAIQ 300 IKRERLKIKR ETLEMRQSHM KQMRSIKEQD KELQKMRLDN EMMELENDKL ELELELKIKE 360 MEMMGIKPKR I*

Sequence ? help Back to Top

Protein Sequence Length: 372 aa Download sequence Send to blast

MEGNLRPHAL TPGGAPSNME QPLCFVSQPQ QVGVQANQVA FTAPAVNQMQ EIENGIKASL  60
SFNNEPRGRA TASASQRQRR VKWNGDMAKL LVSAVSYIDD DIDADHGSRS RVKRMGKWKL  120
VSWAMTKRGF AASPQQCEDK FHDLNKKYKS LTEILGWGTA CGIVEKPALL EQMNLSDKLK  180
DEARKLLSSK NLHYEEMCSY HNRNRQCLLD DPSLQRMLWS MARGSPVEQG MEFPTGYGED  240
DHIVLSVDKE EGGDEFNDDP EGSTEDHHHQ RVHGTKMLKH DREEGSHLSQ DAANDMKAIQ  300
IKRERLKIKR ETLEMRQSHM KQMRSIKEQD KELQKMRLDN EMMELENDKL ELELELKIKE  360
MEMMGIKPKR I*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sevir.1G165400.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004952514.1	0.0	uncharacterized protein LOC101760040
TrEMBL	K3YYZ6	0.0	K3YYZ6_SETIT; Uncharacterized protein
STRING	Si019502m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP58128	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76870.1	2e-44

Link Out ? help Back to Top
Phytozome	Sevir.1G165400.1.p