PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.1G167600.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family ERF
Protein Properties Length: 221aa    MW: 24956.2 Da    PI: 9.8096
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.1G167600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP236.41.3e-1197138351
                 AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51 
                          +GV++  k+ +W A I++      +k+++lg+ gt +eAa+++++a+ 
  Sevir.1G167600.1.p  97 MRGVYF--KNMKWQAAIKVD-----KKQIHLGTVGTQDEAARLYDRAAF 138
                         79**98..47*********4.....5********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS510328.96672151IPR001471AP2/ERF domain
SMARTSM003801.3E-496153IPR001471AP2/ERF domain
PfamPF008476.9E-696139IPR001471AP2/ERF domain
SuperFamilySSF541715.49E-896141IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.3E-699143IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MVSLRRRRLL GLCSGKDSLP VDLPKPIENE KPVEVVHSNV KTFSVHPLPP TSDVLTKSSN  60
GSDDSKEEKT QYYPGKEIKR RKRHRRKQYV DQEPCIMRGV YFKNMKWQAA IKVDKKQIHL  120
GTVGTQDEAA RLYDRAAFMC GREPNFELSE EEKQELRKYT WEDFLAVTRN TITSKKQKKV  180
GLLRRSKADL FMGQSDGDTE MANGGGSSNS DNGDAETSAS *
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.1G167600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0648790.0BT064879.1 Zea mays full-length cDNA clone ZM_BFb0311A16 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004952530.11e-165ethylene-responsive transcription factor-like protein At4g13040
TrEMBLK3YVL01e-164K3YVL0_SETIT; Uncharacterized protein
STRINGSi018306m1e-165(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP75163545
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13040.14e-47ERF family protein