PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.1G172600.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family MYB_related
Protein Properties Length: 192aa    MW: 21315.4 Da    PI: 9.0621
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.1G172600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding315.9e-10143187348
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         +WT+ E+ l++ +   + g+ W++ +r+  + Rt+ q+ s++qky+
  Sevir.1G172600.1.p 143 KWTEYEHRLFLAGLPFYRGN-WNAMSREYLTSRTASQIASHYQKYR 187
                         8*****************99.************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM00717422775IPR001005SANT/Myb domain
PROSITE profilePS512949.401136191IPR017930Myb domain
SuperFamilySSF466892.54E-10138189IPR009057Homeodomain-like
TIGRFAMsTIGR015572.6E-10139189IPR006447Myb domain, plants
SMARTSM007175.4E-5140189IPR001005SANT/Myb domain
PfamPF002497.1E-7143187IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.1E-7143188IPR009057Homeodomain-like
CDDcd001670.00344143186No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MHHDGYAAAA AAPLLALAAS PTLEPEQEPK WTRRDDKFLE LLLFNRNTVS LHIASSIIGK  60
TPAQIHQRCT FMFAELSHVL KSLEVLTPLV WDMEIAAMAA AAEEEVVPEA VVPAAPPVAA  120
RKNSAERATG AGCAKRNKKA AEKWTEYEHR LFLAGLPFYR GNWNAMSREY LTSRTASQIA  180
SHYQKYRNRE K*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.1G172600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004954950.11e-105transcription factor MYBS3-like
TrEMBLA0A368PM011e-97A0A368PM01_SETIT; Uncharacterized protein
STRINGSi039462m3e-96(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP144181825
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16350.11e-13MYB_related family protein