PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.1G201900.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family ERF
Protein Properties Length: 192aa    MW: 20424.7 Da    PI: 5.2972
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.1G201900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.41.7e-182273156
                 AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                        ++y+GVr++k +g+Wv+eIr p   g + r++lg+f++ae Aa a++ a+++l+g+
  Sevir.1G201900.1.p 22 PQYRGVRRRK-WGKWVSEIRQP---GTKVRVWLGSFDSAEAAAVAHDVAALCLRGP 73
                        68*****998.**********8...325**************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.4E-122272IPR001471AP2/ERF domain
PROSITE profilePS5103223.0512381IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-202382IPR016177DNA-binding domain
SMARTSM003804.1E-352387IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-292382IPR001471AP2/ERF domain
PRINTSPR003678.2E-102435IPR001471AP2/ERF domain
CDDcd000181.63E-172481No hitNo description
PRINTSPR003678.2E-104662IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MENHHHIQQQ QPAAPAAAAA TPQYRGVRRR KWGKWVSEIR QPGTKVRVWL GSFDSAEAAA  60
VAHDVAALCL RGPRDAQLNF PGSAGWLPRP ASTDPADIRA AAAEAAERVR REPALVAAAA  120
AEPGRAPPGS RLDDLAVGGE FEDDLESSPR LWTEMAEAML LDPPKWGPDG SDGSEASGSQ  180
HWPQGSLWDA C*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-141981163ATERF1
3gcc_A3e-141981163ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.1G201900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004952770.11e-132ethylene-responsive transcription factor ERF024-like
TrEMBLA0A368PN461e-130A0A368PN46_SETIT; Uncharacterized protein
STRINGGRMZM2G139740_P012e-73(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22443389
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71450.11e-21ERF family protein