PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.1G224600.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family B3
Protein Properties Length: 956aa    MW: 106361 Da    PI: 9.2106
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.1G224600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B330.56.3e-103153961097
                         HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                  B3  10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                         +  +  l +p   a + +    +++++ led++ r+ +v+l  +  +g+  + +GW  Fv+++ +k g+f++F+++ r++f   v++f
  Sevir.1G224600.1.p 315 NYFEEFLLIPPAVAPKLEDL--TNRDVYLEDSEKRRSKVRL--SVVDGSLAFHQGWDIFVSDHLIKLGEFLLFEYTARKRF--SVRIF 396
                         44555688999998888655..4568***************..99999999************************998999..77776 PP
2B337.63.9e-128739481896
                         --HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEE CS
                  B3  18 lpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkv 96 
                         lpk+ +++ ++k +    ++l+d+ +r W+v +    ++  + lt+GWk+Fv  n+L++gD + ++   + ++ e+v++v
  Sevir.1G224600.1.p 873 LPKSLFDTVKQKRHDRNVIMLKDPMNRLWTVLY--HENPVFMGLTAGWKHFVAGNNLQTGDLCKLTK--EaDGDEPVFSV 948
                         788888888777778889***************..*******************************3..33666677665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086310.278306399IPR003340B3 DNA binding domain
CDDcd100171.53E-9307396No hitNo description
Gene3DG3DSA:2.40.330.106.6E-14308399IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.12E-13308401IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.3E-4309399IPR003340B3 DNA binding domain
PfamPF023628.1E-8313396IPR003340B3 DNA binding domain
SMARTSM010190.0042854952IPR003340B3 DNA binding domain
CDDcd100174.85E-11864952No hitNo description
Gene3DG3DSA:2.40.330.104.2E-12871952IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.32873954IPR003340B3 DNA binding domain
PfamPF023625.4E-9873947IPR003340B3 DNA binding domain
SuperFamilySSF1019361.06E-11884948IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 956 aa     Download sequence    Send to blast
MRGGVSGVTN GKTSTAAILE MGKQKEGRAS SNKNMMADDR EKKNKTTTWN GHNKVKSSKK  60
VSTTSLEKMR KKEKLCNANN KKKMQICDDE EGKNRKESTT ISERKDKEKM NKTHKEKMRA  120
ANSKERKILS GHDGVKKSVE VSTAFFGKEK KGKRLNKTIN EELQSDEDEE EGVWNYDGKV  180
KNGKVATAFS EEEKRKRRPN NNTEKETAAL TPAVKEKRMR PSESTEMMML HDKPNGRNVA  240
SNVSKEKKMD TSSGSNYKKR KREEPDSLSK KEKRVWCNAS DKKIYSGTVQ EKKICGSGKE  300
KNRQAPFTFF KFIYNYFEEF LLIPPAVAPK LEDLTNRDVY LEDSEKRRSK VRLSVVDGSL  360
AFHQGWDIFV SDHLIKLGEF LLFEYTARKR FSVRIFGIDS CERLDFKKDP KRVEQGIGYG  420
PPQDNNNGSL IDRQCKTKGT SPLHSKKKTV ILISDSGISA DNEDMLNITS DADSTHHVTI  480
NTNKDLKRVQ SGVGNLPDGV CRTKCISPPC SEGKTSSEII VTGAAPLMHE NDGRVGHELE  540
KHDLDEDLMR KQGINSIPSD SITAVGKHQN HSETIVSQNI YRKYAAPGGF RCLEKWTKAI  600
VNSPATLDGT VPIEPENTRK TGSILVDGYG SIGLNAGNEY FCSEDHHTLV LPVFTMPVKE  660
PLSADRVSNF RHVGTDTDHS INEKGGGAAV QIQTQGEQLE PVGSIVISQS NNIPLSANTA  720
VLGEYGALGR NPAGPEGTCA FVESMLTVPV EKPLSPDGIS KCGSSRTEID HNVNGKGTIV  780
QLETNMDQVE LVGSSVCSQS SNVAMHANHV VVHEPEHFFS RQEGRKSANC AMTESLLPIK  840
DKILELDGHS LLKFSLQLCV PDTTRKWLVS CELPKSLFDT VKQKRHDRNV IMLKDPMNRL  900
WTVLYHENPV FMGLTAGWKH FVAGNNLQTG DLCKLTKEAD GDEPVFSVQI TKRRL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.1G224600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012703636.10.0B3 domain-containing protein Os02g0598200 isoform X1
TrEMBLK3YPQ30.0K3YPQ3_SETIT; Uncharacterized protein
STRINGSi016245m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP122722730
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18960.13e-09B3 family protein