PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sevir.1G234700.1.p

Organism

Setaria viridis

Taxonomic ID

4556

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

TCP

Protein Properties

Length: 313aa MW: 33453.9 Da PI: 11.1979

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sevir.1G234700.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	73.9	4.9e-23	35	150	1	89
TCP 1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.......ssssasec...eaesssss 81 aag+kd++sk+ T g+RdRRv ls+++a++f+d qd+L +d++sk+i WL++ ai+el+++ ++++as+ ++ ++s+ Sevir.1G234700.1.p 35 AAGGKDQQSKVVTVWGLRDRRVQLSVPTAIQFYDSQDRLNVDQPSKAIKWLIRT---AIDELPSLdcsftlpGTDAASSPpaaGDNVEVST 122 6899************************************************86...6888888888899994444433333222222222 PP TCP 82 asnsssg.....................k 89 +++++ + + Sevir.1G234700.1.p 123 SETNK-SsvlslanappallliptlalaA 150 22222.12455665666666666666551 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.1E-19	37	121	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	20.033	38	96	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 313 aa Download sequence Send to blast
MEEIGMECTA YKRPRTALDG GSAAAWRMCQ VARAAAGGKD QQSKVVTVWG LRDRRVQLSV 60 PTAIQFYDSQ DRLNVDQPSK AIKWLIRTAI DELPSLDCSF TLPGTDAASS PPAAGDNVEV 120 STSETNKSSV LSLANAPPAL LLIPTLALAA VATGSHRPCT ASSQGGELGR PCAPAAKGAR 180 PRGPARWRQP AARAGREALR TRVAGSLGRS RPRPGRPRAP AAGGEWGEPG RPRMSAAKRP 240 DQGGSATGGR QWREERKRWS ERERPVVHTV YGAAHHFRLQ PGKDSSSMPP VSIDFVKNLP 300 AEAGRMSFLW TK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zkt_A	8e-16	43	94	1	55	Putative transcription factor PCF6
5zkt_B	8e-16	43	94	1	55	Putative transcription factor PCF6
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sevir.1G234700.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004955073.1	2e-79	transcription factor PCF8
TrEMBL	A0A368PND0	1e-144	A0A368PND0_SETIT; Uncharacterized protein
STRING	Si019114m	1e-107	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11553	26	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30210.2	5e-23	TCP family protein

Link Out ? help Back to Top
Phytozome	Sevir.1G234700.1.p