PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.1G252600.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family ERF
Protein Properties Length: 607aa    MW: 64992.5 Da    PI: 11.0274
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.1G252600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.76.8e-19364414256
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                          y+GVr+++ +g+WvAeIr p++   r+r +lg+f+tae+Aa a+++ + kl+ge
  Sevir.1G252600.1.p 364 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEDAAMAYDREAFKLRGE 414
                         59******9.**********955...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.14E-30363423No hitNo description
Gene3DG3DSA:3.30.730.104.4E-32364422IPR001471AP2/ERF domain
SMARTSM003801.1E-38364427IPR001471AP2/ERF domain
PROSITE profilePS5103223.024364421IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-22364422IPR016177DNA-binding domain
PRINTSPR003671.3E-10365376IPR001471AP2/ERF domain
PfamPF008473.9E-12365414IPR001471AP2/ERF domain
PRINTSPR003671.3E-10387403IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 607 aa     Download sequence    Send to blast
MGARGFFLDQ CRPKPCSRGA SDSSRKLRSP SARLAIRAAT PPPAHASRRP AWREARGGER  60
QKIGPPFWQR PTFISARLAT GRPLRIRTAR PIGSRTPVAR PPLPWQSLAL PVFHARLKAI  120
APRCSLQRAA GTPTHDTQPS LLIDALEAGL VGMEPADRGG GGRGRGWKGK GVSSGSAAGR  180
QLAPVLEDAP AAALLRPLKK IRSPDRRLNR SLSALSSAPP SPDSSSVSNP MSPPATSLPS  240
TRHIFPFAYD PAPAASTAST AAAATAPRLM PLMQYSSVYQ QPLPPQQQQP LQHQQMISFG  300
GGQHQQPPPS PLFPPQLVAP EVQQQMLLRY WSEALNLSPR GFRGGAVPPA LFQQLLRAPG  360
PPKLYRGVRQ RHWGKWVAEI RLPRNRTRLW LGTFDTAEDA AMAYDREAFK LRGENAKLNF  420
PDLFLGKGRV GGSGRTSASA AASCSSSSSS APPTPDDTNT KQAQHHHGEQ PFNSEAKPLL  480
PETEQAKNSE PEPNPQLQPA DHQGGDGNAA MFKPSVTSSG GWGPADEAWF SAWGPGSSVW  540
DYDMDNAHGL FLQSRFASEV TSMDYVPSAP DVPVTPAAGT AMASAASISL PSPPPPPRSP  600
AYMWKD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-19363421463ATERF1
3gcc_A2e-19363421463ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.1G252600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004953233.10.0ethylene-responsive transcription factor ERF053
TrEMBLK3Z0D40.0K3Z0D4_SETIT; Uncharacterized protein
STRINGSi019997m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36913268
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20880.11e-35ERF family protein