PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.1G255800.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family YABBY
Protein Properties Length: 257aa    MW: 26926.7 Da    PI: 8.0253
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.1G255800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY216.48.7e-67212145170
               YABBY   5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakas...qllaaeshl..deslkee.................lle 73 
                         s +eq+Cyv+Cn C+tilav vP +slfk+vtvrCGhC++llsvnl+       + +a s+l  ++sl  +                 l++
  Sevir.1G255800.1.p  21 SPTEQLCYVHCNCCDTILAVGVPCSSLFKTVTVRCGHCANLLSVNLRGLLlppAAPPAASQLsfGHSLLSPtsphglldefalqapsiLMD 111
                         578********************************************99866555556665511344444478889666666555553333 PP

               YABBY  74 elkveeenlksnvekeesastsvssekl...............senedeevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdis 148
                         +   + ++ ++  ++++                            +++ e+++  p v+rPPekrqrvPsaynrfik+eiqrika+nPdi+
  Sevir.1G255800.1.p 112 QASANLSSATTGRSNSS----------CgsnlpaapmpaakppAVQQEPELAKSAPsVNRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDIT 192
                         33333333333333333..........133334444478888766666677766555********************************** PP

               YABBY 149 hreafsaaaknWahfPkihfgl 170
                         hreafsaaaknWahfP+ihfgl
  Sevir.1G255800.1.p 193 HREAFSAAAKNWAHFPHIHFGL 214
                         ********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046905.0E-7022214IPR006780YABBY protein
SuperFamilySSF470951.23E-7157207IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.103.5E-4163206IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009909Biological Processregulation of flower development
GO:0009933Biological Processmeristem structural organization
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0010093Biological Processspecification of floral organ identity
GO:0010154Biological Processfruit development
GO:0010158Biological Processabaxial cell fate specification
GO:0010159Biological Processspecification of organ position
GO:0010450Biological Processinflorescence meristem growth
GO:1902183Biological Processregulation of shoot apical meristem development
GO:2000024Biological Processregulation of leaf development
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MMSSSSSSSS AAFPLDHLAP SPTEQLCYVH CNCCDTILAV GVPCSSLFKT VTVRCGHCAN  60
LLSVNLRGLL LPPAAPPAAS QLSFGHSLLS PTSPHGLLDE FALQAPSILM DQASANLSSA  120
TTGRSNSSCG SNLPAAPMPA AKPPAVQQEP ELAKSAPSVN RPPEKRQRVP SAYNRFIKDE  180
IQRIKAGNPD ITHREAFSAA AKNWAHFPHI HFGLMPDQGL KKTFKTQDGA EDMLLKDGLY  240
AAAAAAAAAN MGITPF*
Functional Description ? help Back to Top
Source Description
UniProtSeems to be associated with phloem cell differentiation. {ECO:0000269|PubMed:17676337}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00620PBMTransfer from AT2G45190Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.1G255800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9607730.0EU960773.1 Zea mays clone 228481 yabby15 protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004953265.10.0protein YABBY 4
SwissprotA2X7Q31e-128YAB4_ORYSI; Protein YABBY 4
SwissprotQ6H6681e-128YAB4_ORYSJ; Protein YABBY 4
TrEMBLK3YV500.0K3YV50_SETIT; Uncharacterized protein
STRINGSi018146m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP144538121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45190.15e-63YABBY family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yang C,Ma Y,Li J
    The rice YABBY4 gene regulates plant growth and development through modulating the gibberellin pathway.
    J. Exp. Bot., 2016. 67(18): p. 5545-5556
    [PMID:27578842]