PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.1G255900.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family YABBY
Protein Properties Length: 137aa    MW: 14370 Da    PI: 10.0046
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.1G255900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY68.42.7e-2145901156
               YABBY 11 CyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasql 56
                        Cyv+Cn C+tilav vP +slfk+vtvrCGhC+s+lsvnl+     
  Sevir.1G255900.1.p 45 CYVHCNCCETILAVGVPCSSLFKTVTVRCGHCASMLSVNLHGLLLP 90
                        ***************************************9987633 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046902.2E-2245106IPR006780YABBY protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 137 aa     Download sequence    Send to blast
MSSKSIGLHS IVEIYRDVVL VLLVVGRHPA GPPRAVPHRA ALLPCYVHCN CCETILAVGV  60
PCSSLFKTVT VRCGHCASML SVNLHGLLLP PAAQVPSFLM NQASANVSAA ATAAAAATCR  120
PRRCRKRSRL CSRSPS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.1G255900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9607732e-73EU960773.1 Zea mays clone 228481 yabby15 protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022684397.13e-47protein YABBY 4-like
TrEMBLA0A368PPH82e-90A0A368PPH8_SETIT; Uncharacterized protein
STRINGSi018146m1e-25(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP5818922
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00180.16e-17YABBY family protein